Installation issue: OpenFOAM (v1712)/OpenFOAM-org: Missing Binaries/Libraries

[plasmas]

When building the OpenFOAM 1712 version, additional binaries and libraries should be produced and installed in platforms/linux64GccDPInt32RpathOpt/bin and platforms/linux64GccDPInt32RpathOpt/lib. However, most binaries and libraries are missing when installing with Spack.

Note: this issue does NOT occur when installing the new OpenFOAM@1906(openfoam@1906~float32~int64~kahip~knl~metis+mgridgen+paraview+scotch+source~vtk~zoltan)

We have users who need the old v17xx/v16xx OpenFOAM. I speculate that the installation method for older versions is somehow different from newer ones, and the package.py is tuned especially for newer versions? Unfortunately, I haven't pinpointed the problem yet.

I will look further into this issue. Any suggestion is appreciated. Thank you!

---

Steps to reproduce the issue

OpenFOAM Installed with Spack:

$ spack install openfoam@1712+mgridgen+paraview %gcc@8.3.0 target=skylake_avx512 ^openmpi@3.1.4

Checking contents inside platforms:

Click to expand!

$ tree platforms
platforms
└── linux64GccDPInt32RpathOpt
    ├── bin
    └── lib
        ├── dummy
        │   └── libPstream.so
        ├── libPstream.so -> mpi-user/libPstream.so
        └── mpi-user
            └── libPstream.so

OpenFOAM Manually Built from Source:

module load openmpi/3.1.4-gcc-4.8.5 gsl/2.5-gcc-8.3.0 boost/1.70.0-gcc-4.8.5 # load dependencies

Then follow the official build guide
(It seems whether ThirdParty-v1712.tgz is used does not affect binaries / libraries inside platforms)

Checking contents inside platforms:

Click to expand!

$ tree platforms
platforms/
└── linux64GccDPInt32Opt
    ├── bin
    │   ├── adiabaticFlameT
    │   ├── adjointShapeOptimizationFoam
    │   ├── ansysToFoam
    │   ├── applyBoundaryLayer
    │   ├── attachMesh
    │   ├── autoPatch
    │   ├── blockMesh
    │   ├── boundaryFoam
    │   ├── buoyantBoussinesqPimpleFoam
    │   ├── buoyantBoussinesqSimpleFoam
    │   ├── buoyantPimpleFoam
    │   ├── buoyantSimpleFoam
    │   ├── cartesian2DMesh
    │   ├── cartesianMesh
    │   ├── cavitatingDyMFoam
    │   ├── cavitatingFoam
    │   ├── cfx4ToFoam
    │   ├── changeDictionary
    │   ├── checkFaMesh
    │   ├── checkMesh
    │   ├── checkSurfaceMesh
    │   ├── chemFoam
    │   ├── chemkinToFoam
    │   ├── chtMultiRegionFoam
    │   ├── chtMultiRegionSimpleFoam
    │   ├── coalChemistryFoam
    │   ├── coldEngineFoam
    │   ├── collapseEdges
    │   ├── combinePatchFaces
    │   ├── compressibleInterDyMFoam
    │   ├── compressibleInterFilmFoam
    │   ├── compressibleInterFoam
    │   ├── compressibleMultiphaseInterFoam
    │   ├── copySurfaceParts
    │   ├── createBaffles
    │   ├── createExternalCoupledPatchGeometry
    │   ├── createPatch
    │   ├── createZeroDirectory
    │   ├── datToFoam
    │   ├── decomposePar
    │   ├── deformedGeom
    │   ├── DPMDyMFoam
    │   ├── DPMFoam
    │   ├── driftFluxFoam
    │   ├── dsmcFoam
    │   ├── dsmcInitialise
    │   ├── electrostaticFoam
    │   ├── engineCompRatio
    │   ├── engineFoam
    │   ├── engineSwirl
    │   ├── equilibriumCO
    │   ├── equilibriumFlameT
    │   ├── extrude2DMesh
    │   ├── extrudeEdgesInto2DSurface
    │   ├── extrudeMesh
    │   ├── extrudeToRegionMesh
    │   ├── faceAgglomerate
    │   ├── faSavageHutterFoam
    │   ├── financialFoam
    │   ├── fireFoam
    │   ├── fireToFoam
    │   ├── flattenMesh
    │   ├── FLMAToSurface
    │   ├── fluent3DMeshToFoam
    │   ├── fluentMeshToFoam
    │   ├── FMSToSurface
    │   ├── FMSToVTK
    │   ├── foamDataToFluent
    │   ├── foamDictionary
    │   ├── foamFormatConvert
    │   ├── foamHelp
    │   ├── foamListRegions
    │   ├── foamListTimes
    │   ├── foamMeshToFluent
    │   ├── foamToEnsight
    │   ├── foamToEnsightParts
    │   ├── foamToFireMesh
    │   ├── foamToGMV
    │   ├── foamToStarMesh
    │   ├── foamToSurface
    │   ├── foamToTetDualMesh
    │   ├── foamToVTK
    │   ├── foamUpgradeCyclics
    │   ├── gambitToFoam
    │   ├── generateBoundaryLayers
    │   ├── gmshToFoam
    │   ├── icoFoam
    │   ├── icoUncoupledKinematicParcelDyMFoam
    │   ├── icoUncoupledKinematicParcelFoam
    │   ├── ideasUnvToFoam
    │   ├── importSurfaceAsSubset
    │   ├── improveMeshQuality
    │   ├── improveSymmetryPlanes
    │   ├── insideCells
    │   ├── interCondensatingEvaporatingFoam
    │   ├── interDyMFoam
    │   ├── interFoam
    │   ├── interIsoFoam
    │   ├── interMixingFoam
    │   ├── interPhaseChangeDyMFoam
    │   ├── interPhaseChangeFoam
    │   ├── kivaToFoam
    │   ├── laplacianFoam
    │   ├── liquidFilmFoam
    │   ├── lumpedPointForces
    │   ├── lumpedPointMovement
    │   ├── lumpedPointZones
    │   ├── magneticFoam
    │   ├── makeFaMesh
    │   ├── mapFields
    │   ├── mapFieldsPar
    │   ├── mdEquilibrationFoam
    │   ├── mdFoam
    │   ├── mdInitialise
    │   ├── mergeMeshes
    │   ├── mergeOrSplitBaffles
    │   ├── mergeSurfacePatches
    │   ├── meshToFPMA
    │   ├── mhdFoam
    │   ├── mirrorMesh
    │   ├── mixtureAdiabaticFlameT
    │   ├── modifyMesh
    │   ├── moveDynamicMesh
    │   ├── moveEngineMesh
    │   ├── moveMesh
    │   ├── MPPICDyMFoam
    │   ├── MPPICFoam
    │   ├── MPPICInterFoam
    │   ├── mshToFoam
    │   ├── multiphaseEulerFoam
    │   ├── multiphaseInterDyMFoam
    │   ├── multiphaseInterFoam
    │   ├── netgenNeutralToFoam
    │   ├── nonNewtonianIcoFoam
    │   ├── objToVTK
    │   ├── orientFaceZone
    │   ├── overInterDyMFoam
    │   ├── overLaplacianDyMFoam
    │   ├── overPimpleDyMFoam
    │   ├── overPotentialFoam
    │   ├── overRhoPimpleDyMFoam
    │   ├── overRhoSimpleFoam
    │   ├── overSimpleFoam
    │   ├── particleTracks
    │   ├── patchesToSubsets
    │   ├── patchSummary
    │   ├── pdfPlot
    │   ├── PDRFoam
    │   ├── PDRMesh
    │   ├── pimpleDyMFoam
    │   ├── pimpleFoam
    │   ├── pisoFoam
    │   ├── plot3dToFoam
    │   ├── pMesh
    │   ├── polyDualMesh
    │   ├── porousSimpleFoam
    │   ├── postChannel
    │   ├── postProcess
    │   ├── potentialFoam
    │   ├── potentialFreeSurfaceDyMFoam
    │   ├── potentialFreeSurfaceFoam
    │   ├── preparePar
    │   ├── profilingSummary
    │   ├── reactingFoam
    │   ├── reactingMultiphaseEulerFoam
    │   ├── reactingParcelFoam
    │   ├── reactingTwoPhaseEulerFoam
    │   ├── reconstructPar
    │   ├── reconstructParMesh
    │   ├── redistributePar
    │   ├── refineHexMesh
    │   ├── refinementLevel
    │   ├── refineMesh
    │   ├── refineWallLayer
    │   ├── releaseAreaMapping
    │   ├── removeFaces
    │   ├── removeSurfaceFacets
    │   ├── renumberMesh
    │   ├── rhoCentralDyMFoam
    │   ├── rhoCentralFoam
    │   ├── rhoPimpleAdiabaticFoam
    │   ├── rhoPimpleDyMFoam
    │   ├── rhoPimpleFoam
    │   ├── rhoPorousSimpleFoam
    │   ├── rhoReactingBuoyantFoam
    │   ├── rhoReactingFoam
    │   ├── rhoSimpleFoam
    │   ├── rotateMesh
    │   ├── scalarTransportFoam
    │   ├── scaleMesh
    │   ├── scaleSurfaceMesh
    │   ├── selectCells
    │   ├── setAlphaField
    │   ├── setFields
    │   ├── setSet
    │   ├── setsToZones
    │   ├── shallowWaterFoam
    │   ├── simpleCoalParcelFoam
    │   ├── simpleFoam
    │   ├── simpleReactingParcelFoam
    │   ├── singleCellMesh
    │   ├── slopeMesh
    │   ├── smapToFoam
    │   ├── snappyHexMesh
    │   ├── snappyRefineMesh
    │   ├── solidDisplacementFoam
    │   ├── solidEquilibriumDisplacementFoam
    │   ├── sonicDyMFoam
    │   ├── sonicFoam
    │   ├── sonicLiquidFoam
    │   ├── splitCells
    │   ├── splitMesh
    │   ├── splitMeshRegions
    │   ├── sprayDyMFoam
    │   ├── sprayEngineFoam
    │   ├── sprayFoam
    │   ├── SRFPimpleFoam
    │   ├── SRFSimpleFoam
    │   ├── star4ToFoam
    │   ├── steadyParticleTracks
    │   ├── stitchMesh
    │   ├── subsetMesh
    │   ├── subsetToPatch
    │   ├── surfaceAdd
    │   ├── surfaceBooleanFeatures
    │   ├── surfaceCheck
    │   ├── surfaceClean
    │   ├── surfaceCoarsen
    │   ├── surfaceConvert
    │   ├── surfaceFeatureConvert
    │   ├── surfaceFeatureEdges
    │   ├── surfaceFeatureExtract
    │   ├── surfaceFind
    │   ├── surfaceGenerateBoundingBox
    │   ├── surfaceHookUp
    │   ├── surfaceInertia
    │   ├── surfaceInflate
    │   ├── surfaceLambdaMuSmooth
    │   ├── surfaceMeshConvert
    │   ├── surfaceMeshExport
    │   ├── surfaceMeshImport
    │   ├── surfaceMeshInfo
    │   ├── surfaceMeshTriangulate
    │   ├── surfaceOrient
    │   ├── surfacePatch
    │   ├── surfacePointMerge
    │   ├── surfaceRedistributePar
    │   ├── surfaceRefineRedGreen
    │   ├── surfaceSplitByPatch
    │   ├── surfaceSplitByTopology
    │   ├── surfaceSplitNonManifolds
    │   ├── surfaceSubset
    │   ├── surfaceToFMS
    │   ├── surfaceToPatch
    │   ├── surfaceTransformPoints
    │   ├── surfactantFoam
    │   ├── temporalInterpolate
    │   ├── tetgenToFoam
    │   ├── tetMesh
    │   ├── thermoFoam
    │   ├── topoSet
    │   ├── transformPoints
    │   ├── twoLiquidMixingFoam
    │   ├── twoPhaseEulerFoam
    │   ├── uncoupledKinematicParcelDyMFoam
    │   ├── uncoupledKinematicParcelFoam
    │   ├── viewFactorsGen
    │   ├── vtkUnstructuredToFoam
    │   ├── wallFunctionTable
    │   ├── writeMeshObj
    │   ├── XiDyMFoam
    │   ├── XiFoam
    │   └── zipUpMesh
    └── lib
        ├── dummy
        │   ├── libkahipDecomp.so
        │   ├── libmetisDecomp.so
        │   ├── libMGridGen.so
        │   ├── libPstream.so
        │   ├── libptscotchDecomp.so
        │   └── libscotchDecomp.so
        ├── libbarotropicCompressibilityModel.so
        ├── libblockMesh.so
        ├── libchemistryModel.so
        ├── libcoalCombustion.so
        ├── libcombustionModels.so
        ├── libcompressibleEulerianInterfacialModels.so
        ├── libcompressibleMultiphaseEulerianInterfacialModels.so
        ├── libcompressibleTransportModels.so
        ├── libcompressibleTurbulenceModels.so
        ├── libCompressibleTwoPhaseMixtureTurbulenceModels.so
        ├── libcompressibleTwoPhaseSystem.so
        ├── libconversion.so
        ├── libdecompose.so
        ├── libdecompositionMethods.so
        ├── libdistributed.so
        ├── libdistributionModels.so
        ├── libDPMTurbulenceModels.so
        ├── libdriftFluxRelativeVelocityModels.so
        ├── libdriftFluxTransportModels.so
        ├── libDSMC.so
        ├── libdynamicFvMesh.so
        ├── libdynamicMesh.so
        ├── libengine.so
        ├── libextrude2DMesh.so
        ├── libextrudeModel.so
        ├── libfaAvalanche.so
        ├── libfieldFunctionObjects.so
        ├── libfileFormats.so
        ├── libfiniteArea.so
        ├── libfiniteVolume.so
        ├── libfluidThermophysicalModels.so
        ├── libforces.so
        ├── libfvMotionSolvers.so
        ├── libfvOptions.so
        ├── libgenericPatchFields.so
        ├── libhelpTypes.so
        ├── libimmiscibleIncompressibleTwoPhaseMixture.so
        ├── libincompressibleTransportModels.so
        ├── libincompressibleTurbulenceModels.so
        ├── libinterfaceProperties.so
        ├── liblagrangianFunctionObjects.so
        ├── liblagrangianIntermediate.so
        ├── liblagrangian.so
        ├── liblagrangianSpray.so
        ├── liblagrangianTurbulence.so
        ├── liblaminarFlameSpeedModels.so
        ├── libliquidPropertiesFvPatchFields.so
        ├── liblumpedPointMotion.so
        ├── libmeshLibrary.so
        ├── libmeshTools.so
        ├── libmolecularMeasurements.so
        ├── libmolecule.so
        ├── libmultiphaseInterFoam.so
        ├── libmultiphaseMixtureThermo.so
        ├── libmultiphaseReactingTurbulenceModels.so
        ├── libmultiphaseSystem.so
        ├── libODE.so
        ├── libOpenFOAM.so
        ├── libOSspecific.o
        ├── liboverset.so
        ├── libpairPatchAgglomeration.so
        ├── libphaseChangeTwoPhaseMixtures.so
        ├── libphaseCompressibleTurbulenceModels.so
        ├── libphaseTemperatureChangeTwoPhaseMixtures.so
        ├── libpotential.so
        ├── libpyrolysisModels.so
        ├── libradiationModels.so
        ├── libreactingEulerianInterfacialCompositionModels.so
        ├── libreactingEulerianInterfacialModels.so
        ├── libreactingMultiphaseSystem.so
        ├── libreactingPhaseSystem.so
        ├── libreactingTwoPhaseSystem.so
        ├── libreactionThermophysicalModels.so
        ├── libreconstruct.so
        ├── libregionCoupled.so
        ├── libregionCoupling.so
        ├── libregionModels.so
        ├── librenumberMethods.so
        ├── librhoCentralFoam.so
        ├── librigidBodyDynamics.so
        ├── librigidBodyMeshMotion.so
        ├── libsampling.so
        ├── libsixDoFRigidBodyMotion.so
        ├── libSLGThermo.so
        ├── libsnappyHexMesh.so
        ├── libsolidChemistryModel.so
        ├── libsolidParticle.so
        ├── libsolidSpecie.so
        ├── libsolidThermo.so
        ├── libsolverFunctionObjects.so
        ├── libspecie.so
        ├── libsurfaceFeatureExtract.so
        ├── libsurfaceFilmDerivedFvPatchFields.so
        ├── libsurfaceFilmModels.so
        ├── libsurfMesh.so
        ├── libtabulatedWallFunctions.so
        ├── libthermalBaffleModels.so
        ├── libthermophysicalProperties.so
        ├── libtopoChangerFvMesh.so
        ├── libturbulenceModelSchemes.so
        ├── libturbulenceModels.so
        ├── libtwoPhaseMixture.so
        ├── libtwoPhaseMixtureThermo.so
        ├── libtwoPhaseProperties.so
        ├── libtwoPhaseReactingTurbulenceModels.so
        ├── libtwoPhaseSurfaceTension.so
        ├── libuserd-foam.so
        ├── libutilityFunctionObjects.so
        ├── libwaveModels.so
        └── openmpi-system
            └── libPstream.so

Platform and user environment

Please report your OS here:

$ uname -a 
Linux login3.pi.sjtu.edu.cn 3.10.0-862.el7.x86_64 #1 SMP Fri Apr 20 16:44:24 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux
$ lsb_release -d
Description:	CentOS Linux release 7.5.1804 (Core)

• packages.yaml

Click to expand!

packages:
  all:
    compiler:
    - gcc
    - intel
    - pgi
    providers:
      blas:
      - openblas
      - intel-mkl
      lapack:
      - openblas
      - intel-mkl
      mpi:
      - openmpi
      - mvapich2
      - mpich
      - intel-mpi
      scalapack:
      - netlib-scalapack
      - intel-mkl
    variants: ~mpi +openmp
  intel-mkl:
    variants: threads=openmp
  intel-parallel-studio:
    variants: +inspector +itac +mkl +mpi +advisor +vtune threads=openmp
  libfabric:
    paths:
      libfabric@1.6.2: /usr
  mpich:
    variants: +hydra +romio +slurm netmod=ofi
  openblas:
    variants: +avx2 +avx512 threads=openmp
  openmpi:
    variants: +pmi +legacylaunchers fabrics=libfabric schedulers=slurm
  slurm:
    buildable: false
    paths:
      slurm@17-11-9-13: /usr

• compilers.yaml

Click to expand!

compilers:
- compiler:
    environment: {}
    extra_rpaths: []
    flags: {}
    modules: []
    operating_system: centos7
    paths:
      cc: /usr/bin/gcc
      cxx: /usr/bin/g++
      f77: /usr/bin/gfortran
      fc: /usr/bin/gfortran
    spec: gcc@4.8.5
    target: x86_64
- compiler:
    environment: {}
    extra_rpaths: []
    flags: {}
    modules: []
    operating_system: centos7
    paths:
      cc: /lustre/opt/cascadelake/linux-centos7-x86_64/gcc-4.8.5/gcc-5.5.0-kbfjue2cejfoi6e5n3cfgkydzwvlkx4p/bin/gcc
      cxx: /lustre/opt/cascadelake/linux-centos7-x86_64/gcc-4.8.5/gcc-5.5.0-kbfjue2cejfoi6e5n3cfgkydzwvlkx4p/bin/g++
      f77: /lustre/opt/cascadelake/linux-centos7-x86_64/gcc-4.8.5/gcc-5.5.0-kbfjue2cejfoi6e5n3cfgkydzwvlkx4p/bin/gfortran
      fc: /lustre/opt/cascadelake/linux-centos7-x86_64/gcc-4.8.5/gcc-5.5.0-kbfjue2cejfoi6e5n3cfgkydzwvlkx4p/bin/gfortran
    spec: gcc@5.5.0
    target: x86_64
- compiler:
    environment: {}
    extra_rpaths: []
    flags: {}
    modules: []
    operating_system: centos7
    paths:
      cc: /lustre/opt/cascadelake/linux-centos7-x86_64/gcc-4.8.5/gcc-8.3.0-aoqn7jsisvrj2u5puapmiufudxmm6wt4/bin/gcc
      cxx: /lustre/opt/cascadelake/linux-centos7-x86_64/gcc-4.8.5/gcc-8.3.0-aoqn7jsisvrj2u5puapmiufudxmm6wt4/bin/g++
      f77: /lustre/opt/cascadelake/linux-centos7-x86_64/gcc-4.8.5/gcc-8.3.0-aoqn7jsisvrj2u5puapmiufudxmm6wt4/bin/gfortran
      fc: /lustre/opt/cascadelake/linux-centos7-x86_64/gcc-4.8.5/gcc-8.3.0-aoqn7jsisvrj2u5puapmiufudxmm6wt4/bin/gfortran
    spec: gcc@8.3.0
    target: x86_64
- compiler:
    environment: {}
    extra_rpaths: []
    flags: {}
    modules: []
    operating_system: centos7
    paths:
      cc: /lustre/opt/cascadelake/linux-centos7-x86_64/gcc-4.8.5/gcc-9.2.0-wqdecm4rkyyhejagxwmnabt6lscgm45d/bin/gcc
      cxx: /lustre/opt/cascadelake/linux-centos7-x86_64/gcc-4.8.5/gcc-9.2.0-wqdecm4rkyyhejagxwmnabt6lscgm45d/bin/g++
      f77: /lustre/opt/cascadelake/linux-centos7-x86_64/gcc-4.8.5/gcc-9.2.0-wqdecm4rkyyhejagxwmnabt6lscgm45d/bin/gfortran
      fc: /lustre/opt/cascadelake/linux-centos7-x86_64/gcc-4.8.5/gcc-9.2.0-wqdecm4rkyyhejagxwmnabt6lscgm45d/bin/gfortran
    spec: gcc@9.2.0
    target: x86_64
- compiler:
    environment: {}
    extra_rpaths: []
    flags: {}
    modules: []
    operating_system: centos7
    paths:
      cc: /lustre/opt/cascadelake/linux-centos7-x86_64/gcc-4.8.5/intel-19.0.4-zxtvkrsgqvhud4og62e55kwgqvhy26d3/compilers_and_libraries_2019.4.243/linux/bin/intel64/icc
      cxx: /lustre/opt/cascadelake/linux-centos7-x86_64/gcc-4.8.5/intel-19.0.4-zxtvkrsgqvhud4og62e55kwgqvhy26d3/compilers_and_libraries_2019.4.243/linux/bin/intel64/icpc
      f77: /lustre/opt/cascadelake/linux-centos7-x86_64/gcc-4.8.5/intel-19.0.4-zxtvkrsgqvhud4og62e55kwgqvhy26d3/compilers_and_libraries_2019.4.243/linux/bin/intel64/ifort
      fc: /lustre/opt/cascadelake/linux-centos7-x86_64/gcc-4.8.5/intel-19.0.4-zxtvkrsgqvhud4og62e55kwgqvhy26d3/compilers_and_libraries_2019.4.243/linux/bin/intel64/ifort
    spec: intel@19.0.4
    target: x86_64
- compiler:
    environment: {}
    extra_rpaths: []
    flags: {}
    modules: []
    operating_system: centos7
    paths:
      cc: /lustre/opt/cascadelake/linux-centos7-x86_64/gcc-4.8.5/intel-19.0.5-2wbf5cihe2454tnokwkbxjjym4nozecd/bin/icc
      cxx: /lustre/opt/cascadelake/linux-centos7-x86_64/gcc-4.8.5/intel-19.0.5-2wbf5cihe2454tnokwkbxjjym4nozecd/bin/icpc
      f77: /lustre/opt/cascadelake/linux-centos7-x86_64/gcc-4.8.5/intel-19.0.5-2wbf5cihe2454tnokwkbxjjym4nozecd/bin/ifort
      fc: /lustre/opt/cascadelake/linux-centos7-x86_64/gcc-4.8.5/intel-19.0.5-2wbf5cihe2454tnokwkbxjjym4nozecd/bin/ifort
    spec: intel@19.0.5
    target: x86_64
- compiler:
    environment: {}
    extra_rpaths: []
    flags: {}
    modules: []
    operating_system: centos7
    paths:
      cc: /lustre/opt/cascadelake/linux-centos7-x86_64/gcc-4.8.5/intel-18.0.4-yzuuq5mpke4i44enduypudbrp2mty2s5/bin/icc
      cxx: /lustre/opt/cascadelake/linux-centos7-x86_64/gcc-4.8.5/intel-18.0.4-yzuuq5mpke4i44enduypudbrp2mty2s5/bin/icpc
      f77: /lustre/opt/cascadelake/linux-centos7-x86_64/gcc-4.8.5/intel-18.0.4-yzuuq5mpke4i44enduypudbrp2mty2s5/bin/ifort
      fc: /lustre/opt/cascadelake/linux-centos7-x86_64/gcc-4.8.5/intel-18.0.4-yzuuq5mpke4i44enduypudbrp2mty2s5/bin/ifort
    spec: intel@18.0.4
    target: x86_64
- compiler:
    environment: {}
    extra_rpaths: []
    flags: {}
    modules: []
    operating_system: centos7
    paths:
      cc: /lustre/opt/cascadelake/linux-centos7-x86_64/gcc-4.8.5/pgi-19.4-hz2tz6aeh4wt5zlw4dfb6mjbccdn5c4h/linux86-64/19.4/bin/pgcc
      cxx: /lustre/opt/cascadelake/linux-centos7-x86_64/gcc-4.8.5/pgi-19.4-hz2tz6aeh4wt5zlw4dfb6mjbccdn5c4h/linux86-64/19.4/bin/pgc++
      f77: /lustre/opt/cascadelake/linux-centos7-x86_64/gcc-4.8.5/pgi-19.4-hz2tz6aeh4wt5zlw4dfb6mjbccdn5c4h/linux86-64/19.4/bin/pgfortran
      fc: /lustre/opt/cascadelake/linux-centos7-x86_64/gcc-4.8.5/pgi-19.4-hz2tz6aeh4wt5zlw4dfb6mjbccdn5c4h/linux86-64/19.4/bin/pgf95
    spec: pgi@19.4
    target: x86_64

Additional information

Spec info

$ spack spec openfoam@1712+mgridgen+paraview %gcc@8.3.0 target=skylake_avx512 ^openmpi@3.1.4
Input spec
--------------------------------
openfoam@1712%gcc@8.3.0+mgridgen+paraview arch=linux-None-skylake_avx512
    ^openmpi@3.1.4

Concretized
--------------------------------
openfoam@1712%gcc@8.3.0~float32~int64~kahip~knl~metis+mgridgen+paraview+scotch+source~vtk~zoltan arch=linux-centos7-skylake_avx512
    ^boost@1.70.0%gcc@8.3.0+atomic+chrono~clanglibcpp~context~coroutine cxxstd=98 +date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy patches=2ab6c72d03dec6a4ae20220a9dfd5c8c572c5294252155b85c6874d97c323199 ~pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout visibility=hidden +wave arch=linux-centos7-skylake_avx512
        ^bzip2@1.0.8%gcc@8.3.0+shared arch=linux-centos7-skylake_avx512
            ^diffutils@3.7%gcc@8.3.0 arch=linux-centos7-skylake_avx512
                ^libiconv@1.16%gcc@8.3.0 arch=linux-centos7-skylake_avx512
        ^zlib@1.2.11%gcc@8.3.0+optimize+pic+shared arch=linux-centos7-skylake_avx512
    ^cgal@4.13%gcc@8.3.0 build_type=Release ~core~demos~imageio+shared arch=linux-centos7-skylake_avx512
        ^cmake@3.15.5%gcc@8.3.0~doc+ncurses+openssl+ownlibs patches=3387faf4a71efe81c0fa17410b270ca7d352081ac88d2322df3da9bb6a6a3f2d ~qt arch=linux-centos7-skylake_avx512
            ^ncurses@6.1%gcc@8.3.0~symlinks~termlib arch=linux-centos7-skylake_avx512
                ^pkgconf@1.6.3%gcc@8.3.0 arch=linux-centos7-skylake_avx512
            ^openssl@1.1.1d%gcc@8.3.0+systemcerts arch=linux-centos7-skylake_avx512
                ^perl@5.30.0%gcc@8.3.0+cpanm+shared+threads arch=linux-centos7-skylake_avx512
                    ^gdbm@1.18.1%gcc@8.3.0 arch=linux-centos7-skylake_avx512
                        ^readline@8.0%gcc@8.3.0 arch=linux-centos7-skylake_avx512
        ^gmp@6.1.2%gcc@8.3.0 arch=linux-centos7-skylake_avx512
            ^autoconf@2.69%gcc@8.3.0 arch=linux-centos7-skylake_avx512
                ^m4@1.4.18%gcc@8.3.0 patches=3877ab548f88597ab2327a2230ee048d2d07ace1062efe81fc92e91b7f39cd00,fc9b61654a3ba1a8d6cd78ce087e7c96366c290bc8d2c299f09828d793b853c8 +sigsegv arch=linux-centos7-skylake_avx512
                    ^libsigsegv@2.12%gcc@8.3.0 arch=linux-centos7-skylake_avx512
            ^automake@1.16.1%gcc@8.3.0 arch=linux-centos7-skylake_avx512
            ^libtool@2.4.6%gcc@8.3.0 arch=linux-centos7-skylake_avx512
        ^mpfr@4.0.2%gcc@8.3.0 patches=f2d2a530acb5e70e1a9d5b80881dbb4a504d56535c4bc103d83e0bb630172029 arch=linux-centos7-skylake_avx512
    ^fftw@3.3.8%gcc@8.3.0~mpi+openmp~pfft_patches precision=double,float arch=linux-centos7-skylake_avx512
    ^flex@2.6.4%gcc@8.3.0+lex patches=09c22e5c6fef327d3e48eb23f0d610dcd3a35ab9207f12e0f875701c677978d3 arch=linux-centos7-skylake_avx512
        ^bison@3.4.2%gcc@8.3.0 patches=89aa362716d898edd0b5c6ae4208dc1b6992887774848a09e8021afd676f7d61 arch=linux-centos7-skylake_avx512
            ^help2man@1.47.11%gcc@8.3.0 arch=linux-centos7-skylake_avx512
                ^gettext@0.20.1%gcc@8.3.0+bzip2+curses+git~libunistring+libxml2+tar+xz arch=linux-centos7-skylake_avx512
                    ^libxml2@2.9.9%gcc@8.3.0~python arch=linux-centos7-skylake_avx512
                        ^xz@5.2.4%gcc@8.3.0 arch=linux-centos7-skylake_avx512
                    ^tar@1.32%gcc@8.3.0 arch=linux-centos7-skylake_avx512
        ^findutils@4.6.0%gcc@8.3.0 patches=84b916c0bf8c51b7e7b28417692f0ad3e7030d1f3c248ba77c42ede5c1c5d11e,bd9e4e5cc280f9753ae14956c4e4aa17fe7a210f55dd6c84aa60b12d106d47a2 arch=linux-centos7-skylake_avx512
            ^texinfo@6.5%gcc@8.3.0 patches=12f6edb0c6b270b8c8dba2ce17998c580db01182d871ee32b7b6e4129bd1d23a,1732115f651cff98989cb0215d8f64da5e0f7911ebf0c13b064920f088f2ffe1 arch=linux-centos7-skylake_avx512
    ^openmpi@3.1.4%gcc@8.3.0~cuda+cxx_exceptions fabrics=libfabric ~java+legacylaunchers~memchecker+pmi schedulers=slurm ~sqlite3~thread_multiple+vt arch=linux-centos7-skylake_avx512
        ^hwloc@1.11.11%gcc@8.3.0~cairo~cuda~gl+libxml2~nvml+pci+shared arch=linux-centos7-skylake_avx512
            ^libpciaccess@0.13.5%gcc@8.3.0 arch=linux-centos7-skylake_avx512
                ^util-macros@1.19.1%gcc@8.3.0 arch=linux-centos7-skylake_avx512
            ^numactl@2.0.12%gcc@8.3.0 arch=linux-centos7-skylake_avx512
        ^libfabric@1.6.2%gcc@8.3.0 fabrics=sockets ~kdreg arch=linux-centos7-skylake_avx512
        ^slurm@17-11-9-13%gcc@8.3.0~gtk~hdf5~hwloc~mariadb~pmix+readline arch=linux-centos7-skylake_avx512
    ^paraview@5.7.0%gcc@8.3.0 build_type=RelWithDebInfo ~cuda cuda_arch=none ~examples~hdf5~mpi+opengl2~osmesa+plugins~python~python3~qt arch=linux-centos7-skylake_avx512
        ^expat@2.2.9%gcc@8.3.0+libbsd arch=linux-centos7-skylake_avx512
            ^libbsd@0.10.0%gcc@8.3.0 arch=linux-centos7-skylake_avx512
        ^freetype@2.10.1%gcc@8.3.0 arch=linux-centos7-skylake_avx512
            ^libpng@1.6.37%gcc@8.3.0 arch=linux-centos7-skylake_avx512
        ^libjpeg-turbo@2.0.3%gcc@8.3.0 arch=linux-centos7-skylake_avx512
            ^nasm@2.14.02%gcc@8.3.0 arch=linux-centos7-skylake_avx512
        ^libtiff@4.0.10%gcc@8.3.0 arch=linux-centos7-skylake_avx512
        ^libxt@1.1.5%gcc@8.3.0 arch=linux-centos7-skylake_avx512
            ^kbproto@1.0.7%gcc@8.3.0 arch=linux-centos7-skylake_avx512
            ^libice@1.0.9%gcc@8.3.0 arch=linux-centos7-skylake_avx512
                ^xproto@7.0.31%gcc@8.3.0 arch=linux-centos7-skylake_avx512
                ^xtrans@1.3.5%gcc@8.3.0 arch=linux-centos7-skylake_avx512
            ^libsm@1.2.2%gcc@8.3.0 arch=linux-centos7-skylake_avx512
            ^libx11@1.6.7%gcc@8.3.0 arch=linux-centos7-skylake_avx512
                ^inputproto@2.3.2%gcc@8.3.0 arch=linux-centos7-skylake_avx512
                ^libxcb@1.13%gcc@8.3.0 arch=linux-centos7-skylake_avx512
                    ^libpthread-stubs@0.4%gcc@8.3.0 arch=linux-centos7-skylake_avx512
                    ^libxau@1.0.8%gcc@8.3.0 arch=linux-centos7-skylake_avx512
                    ^libxdmcp@1.1.2%gcc@8.3.0 arch=linux-centos7-skylake_avx512
                    ^xcb-proto@1.13%gcc@8.3.0 arch=linux-centos7-skylake_avx512
                ^xextproto@7.3.0%gcc@8.3.0 arch=linux-centos7-skylake_avx512
        ^mesa@18.3.6%gcc@8.3.0+glx+llvm+opengl~opengles+osmesa patches=55a5611ca9fcbe8324c4d68a07b338134954ff12c5b122dc78ff376f012a1414 swr=none arch=linux-centos7-skylake_avx512
            ^binutils@2.32%gcc@8.3.0+gold~headers~libiberty+nls~plugins arch=linux-centos7-skylake_avx512
            ^glproto@1.4.17%gcc@8.3.0 arch=linux-centos7-skylake_avx512
            ^libxext@1.3.3%gcc@8.3.0 arch=linux-centos7-skylake_avx512
            ^llvm@9.0.0%gcc@8.3.0~all_targets build_type=Release +clang+compiler-rt+gold+internal_unwind+libcxx~link_dylib+lld+lldb~omp_tsan+polly~python~shared_libs arch=linux-centos7-skylake_avx512
                ^libedit@3.1-20170329%gcc@8.3.0 arch=linux-centos7-skylake_avx512
                ^perl-data-dumper@2.173%gcc@8.3.0 arch=linux-centos7-skylake_avx512
                ^python@3.7.4%gcc@8.3.0+bz2+ctypes+dbm+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4~uuid+zlib arch=linux-centos7-skylake_avx512
                    ^libffi@3.2.1%gcc@8.3.0 arch=linux-centos7-skylake_avx512
                    ^sqlite@3.30.1%gcc@8.3.0~column_metadata+fts~functions~rtree arch=linux-centos7-skylake_avx512
                ^swig@4.0.0%gcc@8.3.0 arch=linux-centos7-skylake_avx512
                    ^pcre@8.42%gcc@8.3.0~jit+multibyte+utf arch=linux-centos7-skylake_avx512
            ^py-mako@1.0.4%gcc@8.3.0 arch=linux-centos7-skylake_avx512
                ^py-markupsafe@1.1.1%gcc@8.3.0 arch=linux-centos7-skylake_avx512
                    ^py-setuptools@41.4.0%gcc@8.3.0 arch=linux-centos7-skylake_avx512
        ^netcdf-c@4.7.2%gcc@8.3.0~dap~hdf4 maxdims=1024 maxvars=8192 ~mpi~parallel-netcdf patches=56532470875b9a97f3cf2a7d9ed16ef1612df3265ee38880c109428322ff3a40,f52db13c61b9c19aafe03c2a865163b540e9f6dee36e3a5f808f05fac59f2030 +pic+shared arch=linux-centos7-skylake_avx512
            ^hdf5@1.10.5%gcc@8.3.0~cxx~debug~fortran+hl~mpi+pic+shared~szip~threadsafe arch=linux-centos7-skylake_avx512
    ^parmgridgen@1.0%gcc@8.3.0~mpi arch=linux-centos7-skylake_avx512
    ^scotch@6.0.8%gcc@8.3.0+compression~esmumps~int64~metis+mpi+shared arch=linux-centos7-skylake_avx512

Additional Build log from Spack

log.linux64GccDPInt32RpathOpt

==> Executing phase: 'configure'
==> [2019-11-16-23:56:12.003471] FILTER FILE: etc/bashrc [replacing "^(\s*export\s+WM_COMPILER)=.*$"]
==> [2019-11-16-23:56:12.005659] FILTER FILE: etc/bashrc [replacing "^(\s*export\s+WM_LABEL_SIZE)=.*$"]
==> [2019-11-16-23:56:12.007492] FILTER FILE: etc/bashrc [replacing "^(\s*export\s+WM_PRECISION_OPTION)=.*$"]
==> [2019-11-16-23:56:12.009308] FILTER FILE: etc/bashrc [replacing "^(\s*export\s+WM_COMPILE_OPTION)=.*$"]
==> [2019-11-16-23:56:12.011085] FILTER FILE: etc/bashrc [replacing "^(\s*export\s+WM_MPLIB)=.*$"]
==> [2019-11-16-23:56:12.012897] FILTER FILE: etc/cshrc [replacing "^(\s*setenv\s+WM_COMPILER)\s+.*$"]
==> [2019-11-16-23:56:12.014207] FILTER FILE: etc/cshrc [replacing "^(\s*setenv\s+WM_LABEL_SIZE)\s+.*$"]
==> [2019-11-16-23:56:12.016016] FILTER FILE: etc/cshrc [replacing "^(\s*setenv\s+WM_PRECISION_OPTION)\s+.*$"]
==> [2019-11-16-23:56:12.017816] FILTER FILE: etc/cshrc [replacing "^(\s*setenv\s+WM_COMPILE_OPTION)\s+.*$"]
==> [2019-11-16-23:56:12.019707] FILTER FILE: etc/cshrc [replacing "^(\s*setenv\s+WM_MPLIB)\s+.*$"]
==> Executing phase: 'build'
==> [2019-11-16-23:56:12.254742] './spack-Allwmake' '-silent' '-j6'
No completion added for /tmp/rpm/spack-stage-openfoam-1712-rjas3rbioafhpmewgrzcqlpry2gxyzvz/OpenFOAM-v1712/platforms/linux64GccDPInt32RpathOpt/bin
Build openfoam with SPACK (-silent -j6)
WM_PROJECT_DIR = /tmp/rpm/spack-stage-openfoam-1712-rjas3rbioafhpmewgrzcqlpry2gxyzvz/OpenFOAM-v1712
Compiling enabled on 6 cores
========================================
2019-11-16 23:56:12 +0800
Starting OpenFOAM-v1712 
  Gcc system compiler
  linux64GccDPInt32RpathOpt, with USERMPI mpi-user

    compile: dirToString.c
    flex: wmkdep.l
built wmake-bin for linux64Gcc
No ThirdParty directory found - skipping
========================================
Compile OpenFOAM libraries

no git description found
    ln: OpenFOAM/lnInclude
    ln: OSspecific/POSIX/lnInclude
wmake  dummy
wmake dummy
    ln: ./lnInclude
    wmkdep: UOPwrite.C
    wmkdep: UIPread.C
    wmkdep: UPstream.C
    Ctoo: UPstream.C
    Ctoo: UIPread.C
    Ctoo: UOPwrite.C
    ld: /tmp/rpm/spack-stage-openfoam-1712-rjas3rbioafhpmewgrzcqlpry2gxyzvz/OpenFOAM-v1712/platforms/linux64GccDPInt32RpathOpt/lib/dummy/libPstream.so
wclean mpi
wmake  mpi
wmake mpi
    ln: ./lnInclude
    wmkdep: PstreamGlobals.C
    wmkdep: UPstream.C
    wmkdep: UIPread.C
    wmkdep: UOPwrite.C
    Ctoo: UOPwrite.C
    Ctoo: UIPread.C
    Ctoo: UPstream.C
    Ctoo: PstreamGlobals.C
    ld: /tmp/rpm/spack-stage-openfoam-1712-rjas3rbioafhpmewgrzcqlpry2gxyzvz/OpenFOAM-v1712/platforms/linux64GccDPInt32RpathOpt/lib/mpi-user/libPstream.so
    found <sys/inotify.h>  --  enabling inotify for file monitoring.
wmake libo (POSIX)
    wmkdep: printStack.C
    wmkdep: fileMonitor.C
    wmkdep: memInfo.C
    wmkdep: cpuInfo.C
    wmkdep: clockTime.C
    wmkdep: cpuTime.C
    wmkdep: POSIX.C
    wmkdep: fileStat.C
    wmkdep: timer.C
    wmkdep: regExp.C
    wmkdep: sigWriteNow.C
    wmkdep: sigStopAtWriteNow.C
    wmkdep: sigQuit.C
    wmkdep: sigInt.C
    wmkdep: sigSegv.C
    wmkdep: sigFpe.C
    Ctoo: sigFpe.C
    Ctoo: sigSegv.C
    Ctoo: sigInt.C
    Ctoo: sigQuit.C
    Ctoo: sigStopAtWriteNow.C
    Ctoo: sigWriteNow.C
    Ctoo: regExp.C
    Ctoo: timer.C
    Ctoo: fileStat.C
    Ctoo: POSIX.C
    Ctoo: cpuTime.C
    Ctoo: clockTime.C
    Ctoo: cpuInfo.C
    Ctoo: memInfo.C
    Ctoo: fileMonitor.C
    Ctoo: printStack.C
In file included from /tmp/rpm/spack-stage-openfoam-1712-rjas3rbioafhpmewgrzcqlpry2gxyzvz/OpenFOAM-v1712/src/OpenFOAM/lnInclude/PackedList.H:644,
                 from fileMonitor.C:29:
/tmp/rpm/spack-stage-openfoam-1712-rjas3rbioafhpmewgrzcqlpry2gxyzvz/OpenFOAM-v1712/src/OpenFOAM/lnInclude/PackedListI.H: In member function 'void Foam::PackedList<nBits>::const_iterator::operator=(const Foam::PackedList<nBits>::iteratorBase&)':
/tmp/rpm/spack-stage-openfoam-1712-rjas3rbioafhpmewgrzcqlpry2gxyzvz/OpenFOAM-v1712/src/OpenFOAM/lnInclude/PackedListI.H:548:13: error: return-statement with a value, in function returning 'void' [-fpermissive]
     return *this;
             ^~~~
In file included from /tmp/rpm/spack-stage-openfoam-1712-rjas3rbioafhpmewgrzcqlpry2gxyzvz/OpenFOAM-v1712/src/OpenFOAM/lnInclude/token.H:46,
                 from /tmp/rpm/spack-stage-openfoam-1712-rjas3rbioafhpmewgrzcqlpry2gxyzvz/OpenFOAM-v1712/src/OpenFOAM/lnInclude/UListIO.C:28,
                 from /tmp/rpm/spack-stage-openfoam-1712-rjas3rbioafhpmewgrzcqlpry2gxyzvz/OpenFOAM-v1712/src/OpenFOAM/lnInclude/UList.C:396,
                 from /tmp/rpm/spack-stage-openfoam-1712-rjas3rbioafhpmewgrzcqlpry2gxyzvz/OpenFOAM-v1712/src/OpenFOAM/lnInclude/UList.H:609,
                 from /tmp/rpm/spack-stage-openfoam-1712-rjas3rbioafhpmewgrzcqlpry2gxyzvz/OpenFOAM-v1712/src/OpenFOAM/lnInclude/List.H:43,
                 from /tmp/rpm/spack-stage-openfoam-1712-rjas3rbioafhpmewgrzcqlpry2gxyzvz/OpenFOAM-v1712/src/OpenFOAM/lnInclude/wordList.H:48,
                 from /tmp/rpm/spack-stage-openfoam-1712-rjas3rbioafhpmewgrzcqlpry2gxyzvz/OpenFOAM-v1712/src/OpenFOAM/lnInclude/Enum.H:40,
                 from fileMonitor.H:46,
                 from fileMonitor.C:26:
/tmp/rpm/spack-stage-openfoam-1712-rjas3rbioafhpmewgrzcqlpry2gxyzvz/OpenFOAM-v1712/src/OpenFOAM/lnInclude/typeInfo.H: In instantiation of 'To& Foam::dynamicCast(From&) [with To = Foam::token::Compound<Foam::List<unsigned int> >; From = Foam::token::compound]':
/tmp/rpm/spack-stage-openfoam-1712-rjas3rbioafhpmewgrzcqlpry2gxyzvz/OpenFOAM-v1712/src/OpenFOAM/lnInclude/ListIO.C:60:13:   required from 'Foam::Istream& Foam::operator>>(Foam::Istream&, Foam::List<T>&) [with T = unsigned int]'
/tmp/rpm/spack-stage-openfoam-1712-rjas3rbioafhpmewgrzcqlpry2gxyzvz/OpenFOAM-v1712/src/OpenFOAM/lnInclude/combineGatherScatter.C:466:27:   required from 'static void Foam::Pstream::listCombineScatter(const Foam::List<Foam::UPstream::commsStruct>&, Foam::List<T>&, int, Foam::label) [with T = unsigned int; Foam::label = int]'
/tmp/rpm/spack-stage-openfoam-1712-rjas3rbioafhpmewgrzcqlpry2gxyzvz/OpenFOAM-v1712/src/OpenFOAM/lnInclude/combineGatherScatter.C:526:9:   required from 'static void Foam::Pstream::listCombineScatter(Foam::List<T>&, int, Foam::label) [with T = unsigned int; Foam::label = int]'
fileMonitor.C:548:60:   required from here
/tmp/rpm/spack-stage-openfoam-1712-rjas3rbioafhpmewgrzcqlpry2gxyzvz/OpenFOAM-v1712/src/OpenFOAM/lnInclude/typeInfo.H:91:5: warning: catching polymorphic type 'class std::bad_cast' by value [-Wcatch-value=]
     catch (std::bad_cast)
     ^~~~~
make: *** [Make/linux64GccDPInt32RpathOpt/fileMonitor.o] Error 1
make: *** Waiting for unfinished jobs....
In file included from /tmp/rpm/spack-stage-openfoam-1712-rjas3rbioafhpmewgrzcqlpry2gxyzvz/OpenFOAM-v1712/src/OpenFOAM/lnInclude/token.H:46,
                 from /tmp/rpm/spack-stage-openfoam-1712-rjas3rbioafhpmewgrzcqlpry2gxyzvz/OpenFOAM-v1712/src/OpenFOAM/lnInclude/Istream.H:47,
                 from /tmp/rpm/spack-stage-openfoam-1712-rjas3rbioafhpmewgrzcqlpry2gxyzvz/OpenFOAM-v1712/src/OpenFOAM/lnInclude/ISstream.H:39,
                 from /tmp/rpm/spack-stage-openfoam-1712-rjas3rbioafhpmewgrzcqlpry2gxyzvz/OpenFOAM-v1712/src/OpenFOAM/lnInclude/IOstreams.H:38,
                 from fileStat.C:27:
/tmp/rpm/spack-stage-openfoam-1712-rjas3rbioafhpmewgrzcqlpry2gxyzvz/OpenFOAM-v1712/src/OpenFOAM/lnInclude/typeInfo.H: In instantiation of 'To& Foam::dynamicCast(From&) [with To = Foam::token::Compound<Foam::List<int> >; From = Foam::token::compound]':
/tmp/rpm/spack-stage-openfoam-1712-rjas3rbioafhpmewgrzcqlpry2gxyzvz/OpenFOAM-v1712/src/OpenFOAM/lnInclude/FixedListIO.C:173:13:   required from 'Foam::Istream& Foam::operator>>(Foam::Istream&, Foam::FixedList<T, Size>&) [with T = int; unsigned int Size = 13]'
/tmp/rpm/spack-stage-openfoam-1712-rjas3rbioafhpmewgrzcqlpry2gxyzvz/OpenFOAM-v1712/src/OpenFOAM/lnInclude/FixedListIO.C:152:15:   required from 'Foam::FixedList<T, Size>::FixedList(Foam::Istream&) [with T = int; unsigned int Size = 13]'
fileStat.C:114:33:   required from here
/tmp/rpm/spack-stage-openfoam-1712-rjas3rbioafhpmewgrzcqlpry2gxyzvz/OpenFOAM-v1712/src/OpenFOAM/lnInclude/typeInfo.H:91:5: warning: catching polymorphic type 'class std::bad_cast' by value [-Wcatch-value=]
     catch (std::bad_cast)
     ^~~~~
==> Executing phase: 'install'
==> [2019-11-16-23:56:29.543477] Installing README.md to /lustre/opt/cascadelake/linux-centos7-skylake_avx512/gcc-8.3.0/openfoam-1712-rjas3rbioafhpmewgrzcqlpry2gxyzvz
==> [2019-11-16-23:56:29.547516] Installing BuildIssues.txt to /lustre/opt/cascadelake/linux-centos7-skylake_avx512/gcc-8.3.0/openfoam-1712-rjas3rbioafhpmewgrzcqlpry2gxyzvz
==> [2019-11-16-23:56:29.551776] Installing COPYING to /lustre/opt/cascadelake/linux-centos7-skylake_avx512/gcc-8.3.0/openfoam-1712-rjas3rbioafhpmewgrzcqlpry2gxyzvz
==> [2019-11-16-23:56:29.560944] Installing Allwmake to /lustre/opt/cascadelake/linux-centos7-skylake_avx512/gcc-8.3.0/openfoam-1712-rjas3rbioafhpmewgrzcqlpry2gxyzvz
==> [2019-11-16-23:56:29.565393] Installing README-spack to /lustre/opt/cascadelake/linux-centos7-skylake_avx512/gcc-8.3.0/openfoam-1712-rjas3rbioafhpmewgrzcqlpry2gxyzvz
==> [2019-11-16-23:56:29.569444] Installing etc to /lustre/opt/cascadelake/linux-centos7-skylake_avx512/gcc-8.3.0/openfoam-1712-rjas3rbioafhpmewgrzcqlpry2gxyzvz/etc
==> [2019-11-16-23:56:31.175202] Installing bin to /lustre/opt/cascadelake/linux-centos7-skylake_avx512/gcc-8.3.0/openfoam-1712-rjas3rbioafhpmewgrzcqlpry2gxyzvz/bin
==> [2019-11-16-23:56:31.503377] Installing wmake to /lustre/opt/cascadelake/linux-centos7-skylake_avx512/gcc-8.3.0/openfoam-1712-rjas3rbioafhpmewgrzcqlpry2gxyzvz/wmake
==> [2019-11-16-23:56:32.491650] Installing applications to /lustre/opt/cascadelake/linux-centos7-skylake_avx512/gcc-8.3.0/openfoam-1712-rjas3rbioafhpmewgrzcqlpry2gxyzvz/applications
==> [2019-11-16-23:56:48.796928] Installing src to /lustre/opt/cascadelake/linux-centos7-skylake_avx512/gcc-8.3.0/openfoam-1712-rjas3rbioafhpmewgrzcqlpry2gxyzvz/src
==> [2019-11-16-23:57:25.498207] Installing tutorials to /lustre/opt/cascadelake/linux-centos7-skylake_avx512/gcc-8.3.0/openfoam-1712-rjas3rbioafhpmewgrzcqlpry2gxyzvz/tutorials
==> [2019-11-16-23:57:50.891904] Installing platforms to /lustre/opt/cascadelake/linux-centos7-skylake_avx512/gcc-8.3.0/openfoam-1712-rjas3rbioafhpmewgrzcqlpry2gxyzvz/platforms
==> [2019-11-16-23:57:50.916451] Installing doc to /lustre/opt/cascadelake/linux-centos7-skylake_avx512/gcc-8.3.0/openfoam-1712-rjas3rbioafhpmewgrzcqlpry2gxyzvz/doc
==> [2019-11-16-23:57:50.967751] FILTER FILE: /lustre/opt/cascadelake/linux-centos7-skylake_avx512/gcc-8.3.0/openfoam-1712-rjas3rbioafhpmewgrzcqlpry2gxyzvz/etc/bashrc [replacing "^(\s*export\s+WM_PROJECT_INST_DIR)=.*$"]
==> [2019-11-16-23:57:51.022378] FILTER FILE: /lustre/opt/cascadelake/linux-centos7-skylake_avx512/gcc-8.3.0/openfoam-1712-rjas3rbioafhpmewgrzcqlpry2gxyzvz/etc/bashrc [replacing "^(\s*export\s+WM_PROJECT_DIR)=.*$"]
==> [2019-11-16-23:57:51.044593] FILTER FILE: /lustre/opt/cascadelake/linux-centos7-skylake_avx512/gcc-8.3.0/openfoam-1712-rjas3rbioafhpmewgrzcqlpry2gxyzvz/etc/cshrc [replacing "^(\s*setenv\s+WM_PROJECT_INST_DIR)\s+.*$"]
==> [2019-11-16-23:57:51.124623] FILTER FILE: /lustre/opt/cascadelake/linux-centos7-skylake_avx512/gcc-8.3.0/openfoam-1712-rjas3rbioafhpmewgrzcqlpry2gxyzvz/etc/cshrc [replacing "^(\s*setenv\s+WM_PROJECT_DIR)\s+.*$"]

[adamjstewart]

@olesenm

[olesenm]

Will also need time to investigate (busy time of year at the moment), but none of the spack installations will use or require the ThirdParty package ever. Something is obviously going quite wrong with your build so you will need to look at the spack build log to see what it is.

One thing that does come to mind could be flex dependencies. Have seen this on some systems where the system flex is old and its headers are getting picked up instead of the ones from the spack installation of flex.

... of course, could be something entirely different too.

[olesenm]

Ok, these were syntax or other errors which the compilers at that time didn't flag as an error. Remember fixing some of these in later versions. It could be that other versions are also partly affected (looks like the catch one got fixed on 23-Jan-2019).

[olesenm]

For @tgamblin - this poses a good general question. How long should we reasonable keep up with older software versions? This one shows that we'd need to either add patches here, or repatch upstream and then either provide a patch (git diff) there or re-issue patched sources. But if we do the later, we'd want to tag them with the patch number and pull the originals.

Not sure where/when this will end.

[scheibelp]

This one shows that we'd need to either add patches here, or repatch upstream and then either provide a patch (git diff) there or re-issue patched sources. But if we do the later, we'd want to tag them with the patch number and pull the originals.

@olesenm another option, is that if the older versions were never patched to work with newer compilers, the Spack OpenFOAM package recipe can add a conflicts('@gcc8:') statement.

Generally we try not to remove versions from a package. There have been exceptions (e.g. if a particular version is no longer available for download).

[plasmas]

Update: This issue also affects OpenFOAM-org version 6 and 7
I also tested installing OpenFOAM-org@6 and @7 through both Spack and manual installation. For both versions, /platform/linux64GccDPInt32RpathOpt/bin remained empty.

Version 7:

$ tree /lustre/opt/cascadelake/linux-centos7-cascadelake/gcc-9.2.0/openfoam-org-7-jm4clcjnccq4nhbheigk6us5uuzek6t2/platforms/linux64GccDPInt32RpathOpt/bin
/lustre/opt/cascadelake/linux-centos7-cascadelake/gcc-9.2.0/openfoam-org-7-jm4clcjnccq4nhbheigk6us5uuzek6t2/platforms/linux64GccDPInt32RpathOpt/bin

0 directories, 0 files

Version 6:

$ tree /lustre/opt/cascadelake/linux-centos7-cascadelake/gcc-9.2.0/openfoam-org-6-bbc2qsw4c2upjui7b4or7ns244tkw63k/platforms/linux64GccDPInt32RpathOpt/bin
/lustre/opt/cascadelake/linux-centos7-cascadelake/gcc-9.2.0/openfoam-org-6-bbc2qsw4c2upjui7b4or7ns244tkw63k/platforms/linux64GccDPInt32RpathOpt/bin

0 directories, 0 files

So, although the issue was discovered in older versions of OpenFOAM, it also occurs in the new OpenFOAM version 7.

The specs for OpenFOAM version 6 and 7 are attached as follows:

Version 7:

$ spack find -v -d openfoam-org@7
==> 1 installed package
-- linux-centos7-cascadelake / gcc@9.2.0 ------------------------
openfoam-org@7~float32~int64+metis patches=73103e6b1bdbf3b1e0d517cbbd11562e98c6e9464df5f43e5125e9a5b457d1c5,ecfa93afa8900f583a23c179db7cf0dc066828a9fd872e061164f21301c2a222 +source
    metis@5.1.0 build_type=Release ~gdb~int64 patches=4991da938c1d3a1d3dea78e49bbebecba00273f98df2a656e38b83d55b281da1,b1225da886605ea558db7ac08dd8054742ea5afe5ed61ad4d0fe7a495b1270d2 ~real64+shared
    openmpi@3.1.4~cuda+cxx_exceptions fabrics=libfabric ~java+legacylaunchers~memchecker+pmi schedulers=slurm ~sqlite3~thread_multiple+vt
        hwloc@1.11.11~cairo~cuda~gl+libxml2~nvml+pci+shared
            libpciaccess@0.13.5
            libxml2@2.9.9~python
                libiconv@1.16
                xz@5.2.4
                zlib@1.2.11+optimize+pic+shared
            numactl@2.0.12
        libfabric@1.6.2 fabrics=sockets ~kdreg
        slurm@17-11-9-13~gtk~hdf5~hwloc~mariadb~pmix+readline
    scotch@6.0.8+compression~esmumps~int64~metis+mpi+shared

Version 6:

$ spack find -v -d openfoam-org@6
==> 1 installed package
-- linux-centos7-cascadelake / gcc@9.2.0 ------------------------
openfoam-org@6~float32~int64+metis patches=ecfa93afa8900f583a23c179db7cf0dc066828a9fd872e061164f21301c2a222 +source
    metis@5.1.0 build_type=Release ~gdb~int64 patches=4991da938c1d3a1d3dea78e49bbebecba00273f98df2a656e38b83d55b281da1,b1225da886605ea558db7ac08dd8054742ea5afe5ed61ad4d0fe7a495b1270d2 ~real64+shared
    openmpi@3.1.4~cuda+cxx_exceptions fabrics=libfabric ~java+legacylaunchers~memchecker+pmi schedulers=slurm ~sqlite3~thread_multiple+vt
        hwloc@1.11.11~cairo~cuda~gl+libxml2~nvml+pci+shared
            libpciaccess@0.13.5
            libxml2@2.9.9~python
                libiconv@1.16
                xz@5.2.4
                zlib@1.2.11+optimize+pic+shared
            numactl@2.0.12
        libfabric@1.6.2 fabrics=sockets ~kdreg
        slurm@17-11-9-13~gtk~hdf5~hwloc~mariadb~pmix+readline
    scotch@6.0.8+compression~esmumps~int64~metis+mpi+shared

Please take your time. Thank you.

[olesenm]

Like @scheibelp suggested, adding conflicts('@gcc8:') might be a solution, or if you select an older compiler for your own builds.
An alternative (if you have sufficient interest) is to open an openfoam issue, but this itself won't get it done. If we need to patch up older OpenFOAM versions, we'll also need to allocate resources (time and money) to handle your request.

[simo-tuomisto]

On our site we have fixed this issue by using a patch to add -Wno-error=deprecated-copy -Wno-deprecated-copy to cWARN- and c++WARN-variables in wmake's rules for gcc. This new warning was added to gcc 9 and it prevents the compilation.

I'm working on a pull request on this, but it will take some time.

[olesenm]

Sounds good, but might still be nice to properly patch 1712 directly, but under the previously mentioned conditions

[plasmas]

Great to hear that. On our cluster, using an older compiler works. We confirm that the OpenFOAM compilation is normal using gcc@7.4.0.

I am closing this issue, for now. Feel free to reopen it.