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Bioinformatics.jl

GitHub release (latest by date) Build Status codecov GitHub license

Usage

Just include the Bioinformatics.jl file with

include("Bioinformatics.jl")

or install the library with

(v1.1) pkg> add "https://github.com/mrtkp9993/Bioinformatics.jl"

and you're ready to use!

Features

  • Global alignment (Needleman-Wunsch algorithm with linear gap penalty)
  • Dotplots
  • Transcription, Reverse Complement, Translation, Open reading frames (ORFs)
  • GC-content, minimum skew
  • Protein mass, Extinction coefficient, Instability index, Isoelectric point, Grand average of hydropathicity (GRAVY) statistics of protein sequences

Documentation

Please refer here.

Contribute

If you find any bugs/issues, please create an issue or fix and create a pull request.

License

GNU General Public License v3.0 © Murat Koptur

About

[DEPRECATED] I deleted this repo a while ago. Forked backup from https://github.com/UnofficialJuliaMirror/Bioinformatics.jl-c429c406-9079-5a14-8339-dedc8835de90.

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