Reproducible Code for: "Integration of Imaging-based and Sequencing-based Spatial Omics Mapping on the Same Tissue Section via DBiTplus"

Paper Authors: Archibald Enninful#, Zhaojun Zhang#, Dmytro Klymyshyn, Matthew Ingalls, Mingyu Yang, Hailing Zong, Zhiliang Bai, Negin Farzad, Graham Su, Alev Baysoy, Jungmin Nam, Yao Lu, Shuozhen Bao, Siyan Deng, Nancy R. Zhang, Oliver Braubach, Mina L. Xu*, Zongming Ma*, Rong Fan* Citation: to-be-updated

Contents

• integration/: Scripts for alignment, deconvolution and integration.
• Data_Lymph_node/, Data_ME_FF/, Data_ME_FFPE/, DBiTplus_CellScape_CLL/: Dataset specific preprocessing and downstream analysis.
• README.md: This file.
• LICENSE: License for code reuse.

Full Dataset Access

The full dataset used in this project is archived and publicly available on Zenodo: https://doi.org/10.5281/zenodo.16827046 You can download the data directly from Zenodo.