MSTmap C++

A software tool that builds genetic linkage maps efficiently and accurately.

This repository is for the C++ executable version of MSTmap. For the online version, navigate to MSTmap online at https://www.mstmap.org/
For the Python library, refer to https://github.com/ucrbioinfo/MSTmap-Python
For the R package, see https://rdrr.io/cran/ASMap/man/mstmap.cross.html

If you have CONDA: type conda install mstmap to download the executable.

To download the source code, type git clone https://github.com/ucrbioinfo/MSTmap

To compile, type cd MSTmap then make (g++ is required)

To execute, type ./mstmap example.txt output.txt

Questions: email stelo@cs.ucr.edu

Name		Name	Last commit message	Last commit date
Latest commit History 16 Commits
LICENSE		LICENSE
LICENSE_GNU_GPL.txt		LICENSE_GNU_GPL.txt
MSTOpt.cpp		MSTOpt.cpp
MSTOpt.h		MSTOpt.h
README.md		README.md
constants.h		constants.h
example.txt		example.txt
genetic_map_DH.cpp		genetic_map_DH.cpp
genetic_map_DH.h		genetic_map_DH.h
genetic_map_RIL.cpp		genetic_map_RIL.cpp
genetic_map_RIL.h		genetic_map_RIL.h
linkage_group_DH.cpp		linkage_group_DH.cpp
linkage_group_DH.h		linkage_group_DH.h
linkage_group_RIL.cpp		linkage_group_RIL.cpp
linkage_group_RIL.h		linkage_group_RIL.h
main.cpp		main.cpp
makefile		makefile

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