me4Pi

This package includes MATLAB code for me4Pi reconstruction.

Requirements

Microsoft Windows 10 or newer, 64-bit
CUDA-capable graphics card, minimum Compute Capability 4.0
CUDA-compatible graphics driver
MATLAB R2022b or newer
- Curve Fitting Toolbox
- Optimization Toolbox
DIPimage Toolbox (http://www.diplib.org/download)
MLE fitting (included in this package) (https://github.com/Li-Lab-SUSTech/fit3Dcspline)
AIM (included in this package) (https://github.com/YangLiuLab/AIM)
DME (included in this package) (https://github.com/qnano/drift-estimation)
ROSE-Z (included in this package) (https://www.nature.com/articles/s41592-021-01099-2)
4Pi-SMS (included in this package) (https://github.com/4Pi-SMS-consortium/4Pi-SMS-analysis)

For any questions/comments about this software, please contact Zhang Lab.

The package is licensed under the GNU GPL.

Name		Name	Last commit message	Last commit date
Latest commit History 6 Commits
AIM		AIM
DME		DME
shared		shared
FastTiff.m		FastTiff.m
GPUmleFit_LM.mexw64		GPUmleFit_LM.mexw64
Mephi_z_4PiSMS.m		Mephi_z_4PiSMS.m
README.md		README.md
SRreconstructhist.m		SRreconstructhist.m
Vutara_drift_correction.m		Vutara_drift_correction.m
W4PiSMS2vutarav2.m		W4PiSMS2vutarav2.m
W4PiSMS_driftcorrection_DME.m		W4PiSMS_driftcorrection_DME.m
binlocalizations.m		binlocalizations.m
build_dmap.m		build_dmap.m
cHistRecon.mexw64		cHistRecon.mexw64
cHistRecon3D.mexw64		cHistRecon3D.mexw64
cMakeSubregions.mexw64		cMakeSubregions.mexw64
coords2mephi.m		coords2mephi.m
correct_drift_LS.m		correct_drift_LS.m
cudart64_80.dll		cudart64_80.dll
dcimgReaderMatlab.m		dcimgReaderMatlab.m
dcimgmatlab.mexw64		dcimgmatlab.mexw64
find_mephi.m		find_mephi.m
find_mephi_ini.m		find_mephi_ini.m
findmax.m		findmax.m
findmax3d.m		findmax3d.m
fit1dgaussian.m		fit1dgaussian.m
imstretch_linear.m		imstretch_linear.m
me4Pi_readdcimg.m		me4Pi_readdcimg.m
mephi_zest.m		mephi_zest.m
mephigrow.m		mephigrow.m
mleFit_LM.m		mleFit_LM.m
normxcorr3.m		normxcorr3.m
phaseCorrection_v3.m		phaseCorrection_v3.m
run_Reconstruction.m		run_Reconstruction.m
run_scanCalibration.m		run_scanCalibration.m
shiftcoords_LS.m		shiftcoords_LS.m
shiftcoords_stack.m		shiftcoords_stack.m
srhist_color.m		srhist_color.m
varunif.m		varunif.m