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Fixed #563 Added parameter atol to motifs/_motifs and docstring #564

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Merged
seanlaw merged 2 commits into from
Mar 6, 2022
Merged

Fixed #563 Added parameter atol to motifs/_motifs and docstring #564

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16ac158
add description of parameter atol to docstring
NimaSarajpoor Mar 6, 2022
9f0d1ca
pass parameter atol to _motifs
NimaSarajpoor Mar 6, 2022
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5 changes: 5 additions & 0 deletions stumpy/motifs.py
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Original file line number Diff line number Diff line change
Expand Up @@ -217,6 +217,10 @@ def motifs(
max_motifs : int, default 1
The maximum number of motifs to return

atol : float, default 1e-8
The absolute tolerance parameter. This value will be added to `max_distance`
when comparing distances between subsequences.

normalize : bool, default True
When set to `True`, this z-normalizes subsequences prior to computing distances.
Otherwise, this function gets re-routed to its complementary non-normalized
Expand Down Expand Up @@ -299,6 +303,7 @@ def motifs(
cutoff,
max_matches,
max_motifs,
atol=atol,
)

return motif_distances, motif_indices
Expand Down