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Jared Tanner edited this page Jan 9, 2026 · 9 revisions

Welcome to the Neuroimaging Applications and Analyses with Lab Course. Below are tutorials and instructions for most course modules.

Module 2 instructions

https://github.com/tannerjared/Neuroimaging-Course/wiki/Module-2:-Bash-Basics-for-MRI-Neuroimaging

Module 3 instructions

https://github.com/tannerjared/Neuroimaging-Course/wiki/Module-3-FreeSurfer-on-HiPerGator

Module 4 instructions

https://github.com/tannerjared/Neuroimaging-Course/wiki/Module-4-MRI-QA-and-3D-Print-Prep

Module 5 instructions

https://github.com/tannerjared/Neuroimaging-Course/wiki/Module-5-FreeSurfer-GLM

Module 6 instructions

https://github.com/tannerjared/Neuroimaging-Course/wiki/Module-6-FSL-ANAT

Module 7 instructions

https://github.com/tannerjared/Neuroimaging-Course/wiki/Module-7-CAT12-VBM

Module 8 instructions

https://github.com/tannerjared/Neuroimaging-Course/wiki/Module-8-Brain-Age

Module 9 instructions

https://github.com/tannerjared/Neuroimaging-Course/wiki/Module-9-Resting-State-fMRI-with-CONN

Module 10 instructions

https://github.com/tannerjared/Neuroimaging-Course/wiki/Module-10-Diffusion-Imaging