InterScale

InterScale is a package for cell interaction analysis in spatial transcriptomics data. It is build on top of PyG (via geome), AnnData, scanpy squidpy and scvi-tools.

Resources

• An installation guide, tutorials and API documentation is available in the documentation.
• Please use issues to submit bug reports.
• If you would like to contribute, check out the contributing guide.
• If you find InterScale useful for your research, please consider citing the InterScale preprint.

Reference

@article{DrummerJimenez2026,
  author    = {Drummer, F. and Jimenez, S. et al.},
  title     = {InterScale reveals multi-scale cellular interaction programs in spatial transcriptomics},
  journal   = {BioArvix},
  year      = {2026},
  doi       = {???},
  url       = {???}
}