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Revisions

  • some small improvements to clarity

    @roblanf roblanf committed May 25, 2022
    f98c207

  • These might be called 'Infrequently asked questions' instead. The idea is to provide small reproducible analyses that answer a specific (and sometimes niche) question. The analyses should be reproducible, and should specify the version of IQ-TREE that they were last tested on.

    @roblanf roblanf committed May 25, 2022
    a22bcfe

  • fix a couple of small typos

    @roblanf roblanf committed May 25, 2022
    757639d

  • add guide for compiling deep learning kernel with onnxruntime

    @bqminh bqminh committed Apr 12, 2022
    443946a

  • Introduce option --single-output to output all alignments into a single file

    @trongnhanuit trongnhanuit committed Apr 8, 2022
    1ef5627

  • change option --no-unaligned

    @trongnhanuit trongnhanuit committed Mar 25, 2022
    c20ef9b

  • Merge branch 'master' of https://github.com/iqtree/iqtree2.wiki

    @trongnhanuit trongnhanuit committed Mar 25, 2022
    5ffe13f

  • add custom distribution file

    @trongnhanuit trongnhanuit committed Mar 25, 2022
    e2b37c0

  • update manual pdf front page

    @bqminh bqminh committed Mar 25, 2022
    807f634

  • update AliSim doc version

    @bqminh bqminh committed Mar 25, 2022
    5075d83

  • Minor revised AliSim

    @trongnhanuit trongnhanuit committed Mar 23, 2022
    38fd300

  • Merge branch 'master' of https://github.com/iqtree/iqtree2.wiki # Fix Conflicts: # AliSim.md

    @trongnhanuit trongnhanuit committed Mar 23, 2022
    8b637fc

  • Revised Command reference

    @trongnhanuit trongnhanuit committed Mar 23, 2022
    d318d30

  • partially revised command reference for AliSim

    @bqminh bqminh committed Mar 23, 2022
    7f30be8

  • Fix hyperlink of indel models

    @trongnhanuit trongnhanuit committed Mar 8, 2022
    ac5a98f

  • Minor update

    @trongnhanuit trongnhanuit committed Mar 8, 2022
    77e0453

  • Rm --export-alisim-cmd

    @trongnhanuit trongnhanuit committed Mar 1, 2022
    692593b

  • Introduce new option --export-alisim-cmd

    @trongnhanuit trongnhanuit committed Feb 22, 2022
    11be566

  • Update the description of --length option

    @trongnhanuit trongnhanuit committed Feb 21, 2022
    91754c1

  • add FLAVI and re-order protein matrices in alphabet

    @bqminh bqminh committed Feb 11, 2022
    0e504e9

  • fix Q.plant appear 2x and add Q.insect, thanks Lars

    @bqminh bqminh committed Feb 11, 2022
    f22ebf9

  • add AliSim preprint into tutorial

    @bqminh bqminh committed Dec 17, 2021
    22cb082

  • add table of content for AliSim

    @bqminh bqminh committed Dec 16, 2021
    36762e7

  • Merge branch 'alisim' of https://github.com/iqtree/iqtree2.wiki

    @trongnhanuit trongnhanuit committed Dec 14, 2021
    296914c

  • Minor updates

    @trongnhanuit trongnhanuit committed Dec 14, 2021
    559ad73

  • add new Q matrices

    @bqminh bqminh committed Dec 13, 2021
    40b63c6

  • minor updates

    @trongnhanuit trongnhanuit committed Dec 10, 2021
    288bc4c

  • fix errors in --indel-size

    @trongnhanuit trongnhanuit committed Dec 10, 2021
    b254b0f

  • Update examples for heterotachy models

    @trongnhanuit trongnhanuit committed Nov 26, 2021
    2dcce6d

  • Merge branch 'master' of https://github.com/iqtree/iqtree2.wiki

    @trongnhanuit trongnhanuit committed Nov 25, 2021
    10bf927