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v2.1

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@tomarovsky tomarovsky released this 30 Nov 16:31
· 178 commits to master since this release
  • New feature: Added the ability to reconstruct phylogenies directly from multi sample VCF (contributed by @Zubiriguitar and @mahajrod).
  • New feature: Introduced the option to generate reference-assisted genome assemblies from VCF (contributed by @Zubiriguitar and @mahajrod).
  • PHYLIP Bug Fix: Resolved a bug in PHYLIP integration: the first 10 characters of genome assembly names are no longer required to be unique.
  • Added support for Snakemake>=9.
  • Various other bug fixes and performance improvements.