An open-source R package containing decontamination pipelines for low-biomass microbiome data
-
Updated
Jul 12, 2024 - R
An open-source R package containing decontamination pipelines for low-biomass microbiome data
Chemical metrics for microbial communities
NGS4ECOPROD - An easy-to-use conda environment and pipelines for metagenome sequence analysis
Supporting materials for the manuscript "Characterisation and comparison of semen microbiota and sperm function in men with infertility, recurrent miscarriage, or proven fertility
Comparative study of soil microbiome using QIIME2
Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
The `crest4` python package can automatically assign taxonomic names to DNA sequences obtained from environmental sequencing.
Prepare a report for taxonomic assignment based on 16S rRNA sequences, using BLAST.
MicrobioSee2, a desktop sofware for visulization of microbiome result, which contian multiple modules, such as Alpha Diversity, Beta Diversity, Species Conpositions, volcano plot, and pie chart.
MicrobiomeStat Tutorial Repository: This is a comprehensive resource for learning how to use the MicrobiomeStat package. It provides a step-by-step guide to effectively analyze complex microbiome data.
Repository for manuals for NGS data analysis
Tesis licenciatura "Metataxonómica de bacterias comoindicador de la descarga de xenobióticos por el Anillo de Cenotes en el sedimento de manglar rojo"
Fast, accurate taxonomic assignments for the human vaginal microbiota
Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing
Microbial community dynamics during key life-history transitions in the chemosymbiotic mussel, Gigantidas childressi
Estimating Phylogenetic trees using six microorganisms 16S rRNA gene with Unsupervised Learning, web based tools and Molecular Evolutionary Genetics Analysis MEGA7
iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline
Hypervariable region primer-based extractor for 16S rRNA and other SSU/LSU sequences.
Make Picrust2 Output Analysis and Visualization Easier
Add a description, image, and links to the 16s-rrna topic page so that developers can more easily learn about it.
To associate your repository with the 16s-rrna topic, visit your repo's landing page and select "manage topics."