scripts to align a given wave to its transcription using trained models by Kaldi
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Updated
Aug 15, 2019 - Shell
scripts to align a given wave to its transcription using trained models by Kaldi
Tools for microscopic captures and focus stackshots (beta)
A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to a CpG count matrix (Bismark cytosine reports)
nRex: Germline and somatic single-nucleotide, short indel and structural variant calling
Bioinformatics N' Stuff
Some scripts to make your bioinformatics analyses reproducible and a bit easy 🤓
ANTs transformation and tractogram registration in MNI space, using as the reference template the MNI152 T1 at 1.25 mm. WARNING: all the given inputs should be in the same anatomical space.
BASH scripts to extract information from FASTA files.
SLURM job temps @UAlbany
Warp T1 and tensor volumes with a given non-linear warp.nii.gz using ANTs.
bash script to align and rename subtitles using ffsubsync
It is the Bash script for testing purposes. It facilitates writing performance tests on SSD with different partition alignment settings. It uses parted to create a partition, a config JSON file to provide parted with different partition alignment settings, and dd to test writing performance.
FA-based non linear ANTs registration of the tensor to the FMRIB58_FA_1mm.nii.gz template or the IITmean_FA template.
Whole genome sequence simulation of DUF1220 domains and testing of alignment strategies
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