quick demo of the ARTIC pipeline
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Updated
Jan 14, 2021 - Jupyter Notebook
quick demo of the ARTIC pipeline
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Preprocessing of raw reads obtained using ARTIC's protocol for sequencing SARS-CoV-2 genome.
SINTONIZAR PID CON ARDUINO – CONTROL DE POSICIÓN DE UNA PELOTA EN LEVITACIÓN
A toolkit for monitoring ONT MinION sequencing, followed by data analysis, for viral genomes amplified with tiled amplicon sequencing.
CODEHOP-mediated genotyping of HIV-1
App that uses React and the Art Institute of Chicago's API to allow users to browse different art pieces.
My goal is to see how the choice of a reference genome affects the artic pipelines accuracy.
Nextflow pipeline to process SARS-CoV-2 genomes by Nanopore Sequencing using ARTIC (https://github.com/artic-network/fieldbioinformatics) tools
Pipeline to generate consensus.fasta files and identify pangolin lineage and nextstrain clade of Sars-CoV-2 genomes from ONT sequencing
a set of tools for viral amplicon schemes
SARS-CoV-2 workflow for nanopore sequence data
Climate science at high latitudes: eScience for linking Arctic measurements and modeling
Assembly and intrahost/low-frequency variant calling for viral samples
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