Data analysis helper programs for AniBio
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Updated
May 1, 2024 - Python
Data analysis helper programs for AniBio
This tool uses a Python script to quickly calculate volumes to be combined from various total protein solutions (such as a BCA assay) to create working solutions containing a constant protein quantity with buffer and loading dye.
Simple script to color code amino acids according to ConSurf analysis
A collection of python scripts for chemistry and biochemistry
RIVEM software plugin for UCSF Chimera
A tool to generate protein sequences and properties
A simple open-source data visualization tool for research purposes
RBApy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Collection of scripts used for an upper-division biochemistry lab sequence.
A naive extension and analysis of a DE system describing the interactions between tumor cells, effector cells, HTCs, and iNKT cells
A simple DNA transcription/translation app written in Python and kivy
Addressing the class imbalance problem in deep learning-based drug discovery: a graph neural network to predict drug-target binding affinity of protein fibrils
It is a python script for generation of Phylogenetic trees from a given DNA or Protien Sequences.
Biokemijska informatika [UL FKKT]
Python library for dealing with metalloprotein structures
Extension of UCSF Chimera
Search for new PDB structures corresponding to a search term and deposited after a certain date.
A robust Python library designed for the generation and optimization of molecular fingerprints
Graphical user interface allows easy access to the multiscale model-free idealization methods in the R-package clampSeg (https://cran.r-project.org/package=clampSeg). It supports the model-free segmentation methods JSMURF (https://ieeexplore.ieee.org/document/6655999), JULES (https://ieeexplore.ieee.org/document/8374882) and HILDE (https://arxiv…
This code attempts to predict the influence of osmolytes on protein stability
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