Scripts for Basecalling on GridION Sequenicng machines from Oxford Nanopore
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Updated
Jul 25, 2022 - Shell
Scripts for Basecalling on GridION Sequenicng machines from Oxford Nanopore
CocoTF: a workflow to identify context specific co-occurring TF motifs using bedtools, Homer and R packages.
A script that efficiently processes multiple '.fastq' files, automatically organizing the pre-trimmed output into a folder named 'qc_reports_pretrim' for streamlined quality control and sequence data analysis.
Shell script to post-process OrthoFinder's output into pairwise tables used in macrosyntR
Toolbox for comparative genomics
Pipeline to prepare RNA sequencing data for tandem repeat annotation with TRAL
Computational analysis of the evolutionarily conserved Missing In Metastasis / Metastasis Suppressor 1 gene predicts novel interactions, regulatory regions and transcriptional control (Petrov et al. 2019 Sci Rep)
Extracts information from GFF and prepare them in bed format
script to perform amplicon sequencing analysis for Norovirus genotypes and variants
Set of scripts to process RAD-Seq HTS data on computing grids like MetaCentrum.
Bu sayfada Biyoinformatik analizler ile ilgili eğitim materyalleri bulunmaktadır.
slurm and pbs scripts for genome, metagenome, transcriptome analysis.
Assorted scripts in Perl, Bash, R and whatsoever directly from a bioinformatician's scripts/ folder
Synchronise Nanopore reads with a server.
SLURM job temps @UAlbany
Set of scripts to run STRUCTURE in parallel on computing grids like MetaCentrum. Scripts are designed for grids and clusters using PBS Pro, but can be easily adopted for another queue system.
A Python workflow for taking chemicals, finding the genes they interact with, and mapping the communities of genetic interactions.
Shell script to sort .gtf files
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