flashcard / quiz app for Bioinformatics that is available on Android

Spring Batch and biological data

Tool for realigning soft-clipped bases from amplicon reads

Bioinformatics at coursera

Senior project designed to take in a large text file of DNA sequences to parse, filter, and format for NCBI's BLAST tools.

Use the MTI tooling from NCBI to map UMLS and MESH terms to arbitrary text.

Sequence management tools relying on the Bioinformatics Databank Manager System, BeeDeeM (miror).

Back Up of Trimmomatic for learning and testing/modification. Find Original Code at: https://github.com/usadellab/Trimmomatic

An object-oriented cheminformatics library.

Searches for desired genes in an XLSX file & compares multiple VCF/XLSX files

Web application for fast and reliable identification of polymorphic SSRs loci

Program used in combination with mgfToBinStack to import data from Mascot to be used in QuiXoT by converting Mascot's DAT files into QuiXML files.

K-mer spectrum corrector based on Hadoop

Hidden Markov Model

📖🔬☕ BioJava is an open-source project dedicated to providing a Java library for processing biological data.

This repository hosts the java implementation of MITHrIL and SPECIFIC

Tool for creating and analyzing consensus sequence from DNA

Reading and interpreting TreeSS styles for phylogenetic trees in Java

PoGo is a proteogenomic tool developed primarily by Christoph Schlaffner. PoGo's purpose is to map peptides identified through mass spectrometry to a given genome. My edits of the tool are in order to expand its functionality to allow for the input of novel peptides without protein-coding region (CDS) annotation. The program is open-source and a…

Programming Life, contextproject 2015.