flashcard / quiz app for Bioinformatics that is available on Android

Spring Batch and biological data

Tool for realigning soft-clipped bases from amplicon reads

Bioinformatics at coursera

Senior project designed to take in a large text file of DNA sequences to parse, filter, and format for NCBI's BLAST tools.

Use the MTI tooling from NCBI to map UMLS and MESH terms to arbitrary text.

Sequence management tools relying on the Bioinformatics Databank Manager System, BeeDeeM (miror).

Back Up of Trimmomatic for learning and testing/modification. Find Original Code at: https://github.com/usadellab/Trimmomatic

An object-oriented cheminformatics library.

Searches for desired genes in an XLSX file & compares multiple VCF/XLSX files

Program used in combination with mgfToBinStack to import data from Mascot to be used in QuiXoT by converting Mascot's DAT files into QuiXML files.

K-mer spectrum corrector based on Hadoop

Hidden Markov Model

📖🔬☕ BioJava is an open-source project dedicated to providing a Java library for processing biological data.

Programming Life, contextproject 2015.

Finding tandem repeats using Suffix Array Induced Sorting and Dynamic Programming methods.

A PDB Viewer Application implemented completely in JavaFX

A simpler, more complete, less verbose, dev-friendly version of libsbgn

Takes a DNA string and converts to RNA

An open source and cross platform application to fix, and find problems in protein FASTA sequence files.