This is a set of bash wrapper scripts for STAR that simplify it's setup and use with a set of pre-defined parameters.
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Updated
Jun 13, 2023 - Shell
Bioinformatics is an interdisciplinary field that intersects with biology, computer science, mathematics and statistics. It concerns itself with the development and use of methods and software tools for collecting and analyzing biological data.
This is a set of bash wrapper scripts for STAR that simplify it's setup and use with a set of pre-defined parameters.
Unraveling Evolutionary Relationship between Fungi Species
Supplementary information for analyses reported in Hobbs et al. (2023), for presenting the software package `cazy_webscraper`
Workflow for Metagenomics Data in 2022Summer Maize Rhizomicrobiome
Project of ChIP-seq pipeline automatization for "Bioinformatics and Genomic Analysis" course at the University of Seville
High-throughput Workflow for Processing and Analyzing RNA-Seq Data
This pipeline give you a concatenated multi alignment of 31 Single Copy Markers from multiple genome assembly for further phylogenetic analysis.
Workflow for running PennCNV with Illumina platform final report
Honours project, 2019
Research project undertaken in Computational Genomics at the University of Pittsburgh. with Dr. Miler Lee and students to understand Maternal-to-Zygotic transition in Xenopus laevis
AHTA course project
Heavily commented, quick script for processing sequence files for length and basepair composition
Bioinformatics Cluster Administration made simple with Ansible 🦠🖥🔬
BLAST finds regions of similarity between biological sequences.
BEDOPS is an open-source command-line toolkit that performs highly efficient and scalable Boolean and other set operations, statistical calculations, archiving, conversion and other management of genomic data of arbitrary scale.
scripts and resources for performing miRNA sequencing analysis using tools like mirPRo and miRDeep2. Explore the code to process reads, map them to the genome, quantify known miRNAs, identify novel miRNAs, and browse the results
ALL-BGCs: An Integrated Pipeline for Metagenome Mining for Biosynthetic Gene Clusters
Metagenomic functional annotation pipeline