Python library to facilitate genome assembly, annotation, and comparative genomics
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Updated
Jul 22, 2024 - Python
Python library to facilitate genome assembly, annotation, and comparative genomics
A Python API for the RCSB Protein Data Bank (PDB)
PrimerServer2: a high-throughput primer design and specificity-checking platform
ElasticBLAST is a cloud-based tool to perform your BLAST searches faster and make you more effective
Assign taxonomy with blast, can be used for qiime
Python script for carrying out reciprocal BLAST hits
Most up-to-date scripts used in the Palumbi lab
An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵
Search, molecular modeling and molecular docking of peptides.
Retrieve sequences flanked by an arbitrary number of primers from a nucleotide collection.
The art of decorating a phage genome by gluing feature cutouts into it.
Tool for analysing BLAST output for ncRNA sequences
omicR It creates fasta files, downloads genomes from NCBI using the refseq number, creates databases to run BLAST+, runs BLAST+ and filters these results to obtain the best match per sequence. These scripts can be used to run BLAST alignment of short-read (DArTseq data) and long-read sequences (Illumina, PacBio… etc).
A command line tool for identifying conserved lysine modification sites
A utility for blasting one protein FASTA file against another FASTA file to find orthologs.
Workflow for identifying and classifying homologous gene/protein sequences
Implementation of the Blast technique and algorithm to search for a protein query in a protein database.
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