BBP domains specification (schemas, vocabularies)
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Updated
May 18, 2022 - Scala
BBP domains specification (schemas, vocabularies)
Search, download, and prepare brain atlas data.
Dictionary of Functional Modes for brain imaging
Automatic annotation of cell identities in dense cellular images.
Code repository for automatic retrieval and registration of rodent brain atlases
GNU R package for reading and writing neuroimaging file formats. Not limited to FreeSurfer anymore, despite its name.
Brain tissue segmentation using several algorithms: EM, Atlas-based methods, nnunet
LocareJSON is a collection of JSON schemas for defining geometrical shapes with coordinates in 3D brain atlas coordinate spaces.
A neuroanatomy-based augmented reality experience powered by OpenCV. Features 3D visuals of the Atlas Brain Map slices with real-time ArUco marker detection.
Pairwise Brain Atlas Construction (BAtCh) HTCondor/SLURM workflow
Brain/MINDS Marmoset Brain Atlas Viewer made using Unity engine
a web-based 3D tool to register brain MRI volumes to the Marmoset Brain Atlas
a web-based 2D high-resolution brain image viewer
A simple Python-based tool for finding brain atlas regions based on MNI coordinates.
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