🎯 ChIP peak Annotation, Comparison and Visualization
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Updated
May 15, 2024 - R
🎯 ChIP peak Annotation, Comparison and Visualization
deepStats: a stastitical toolbox for deeptools and genomic signals
Extract Sequence from Genome According to Annotation File
ChIP-seq/RNA-seq analysis software suite for gene expression heatmaps
API for HOMER in R for Genomic Analysis using Tidy Conventions
AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project
TFregulomeR reveals transcription factors’ context-specific features and functions
Reproducible reanalysis of a combined ChIP-Seq & RNA-Seq data set
A Snakemake workflow for performing and visualizing differential expression analyses (DEA) on NGS data powered by the R package limma.
Statistical and computational analysis of the human genome
7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs
AnceTran2.0: R package for transcriptome evolution analysis based on RNA-seq expression data or ChIP-seq TF-binding data
Profile and Heatmap Visualization by Using ggplot2 and grid
R/Bioconductor package for optimized functional annotation of ChIP-seq data
Bioconductor Package - Metrics to estimate the level of similarity between two ChIP-Seq profiles
One liner analyses and visualizations for bulk RNA-seq and ChIP-seq data
An R package for de novo discovery of enriched DNA motifs (e.g. TFBS)
R package to provide gene transfer format files from commonly investigated model organisms in ChIP-seq studies
An archived version of the csaw repository, see https://github.com/LTLA/csaw for the active version.
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