Computational Pathology Toolbox developed by TIA Centre, University of Warwick.
-
Updated
Jun 3, 2024 - Python
Computational Pathology Toolbox developed by TIA Centre, University of Warwick.
A simple python program to organize a digital slide collection as an SQLite database
PAthological QUpath Obsession - QuPath and Python conversations
Library for Digital Pathology Image Processing
Tools for computational pathology
Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, CVPR'22, MICCAI'23, Histopathology'23, MICCAI'24]
Tools for whole slide image (WSI) processing. Especially for (pairwise) patch extraction, annotation parsing and data preparation for deep learning purposes.
Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering
Demographic bias in misdiagnosis by computational pathology models - Nature Medicine
WSI classification
SpatialVisVR is a VR platform tailored for advanced visualization and analysis of medical images in immuno-oncology. It allows real-time capture and comparison of mIF and mIHC images via mobile devices. Leveraging deep learning, it matches and displays similar images, supporting up to 100 protein channels.
Feature extraction from GEOJson nuclei and tissue segmentation maps
Histomic Prognostic Signature (HiPS): A population-level computational histologic signature for invasive breast cancer prognosis
This repository is dedicated to the segmentation of histological features in regenerated vascular tissues obtained from tissue-engineered vascular grafts (TEVGs) implanted in sheep.
A vision-language foundation model for computational pathology - Nature Medicine
PathoPatcher is a Python project designed for accelerating Whole Slide Image Preprocessing, employing AI-based preprocessing techniques with features like annotation handling, color normalization, and configurable parameters
Stain normalization tools for histological analysis and computational pathology
Python package for reading DICOM WSI file sets.
CLI tool to run specimen-level inference on whole slide images
Multimodal Context-Aware Detection of Glioma Biomarkers using MRI and WSI
Add a description, image, and links to the digital-pathology topic page so that developers can more easily learn about it.
To associate your repository with the digital-pathology topic, visit your repo's landing page and select "manage topics."