A simple HTML page with Javascript to determine all possible sequences represented by IUPAC nucleotide codes

☣️ Convert Oligonucleotides to Literal DNA Strand Sequences

Web app to find mismatched base pairs between hybridized DNA sequences.

Material used for a bioinformatics computer lab course, covering DNA/RNA sequence assembly and analysis, phylogenetic analysis, gene functional annotation, and metagenomic analysis

These Bioinformatics HTML5/JS files accompany the book entitled: Algorithms in Bioinformatics: Theory and Implementation, and they are compatible with all internet browsers. These algorithms include more than 120 open-source implementations that describe many known or novel algorithms in Bioinformatics.

Simple JS implementation of Objective Digital Stain (ODS) produces ODS images from DNA sequences. On ODSs, the information content (IC) is represented vertically on the y-axis and the frequency of different letters is represented horizontally on the x-axis.

Sequence Logos based on maximum values is an alternative that provides full control over how the graphics of a Sequence Logo should look like. All the inner workings of this open source application are written in native javascript. The application is independent of the internet.

This is an application that shows the informational structure of DNA sequences. The objective digital stain (ODS) is represented by a distribution of points on a two-dimensional image, which reflects the information structure inside a DNA/RNA sequence.

DNA sequence Visualization for detecting most affected protein for various types of cancer. This visualization is done using D3.js

SEGUID v2: Development and Discussions

strataG is a toolkit for haploid sequence and multilocus genetic data summaries, and analyses of population structure.