A Knowledge Graph of Common Chemical Names to their Molecular Definition
IUPAC SMILES+ Specification
Transformer-based molecular generative model for antiviral drug design
Blue Obelisk Data Repository - your one stop place of element and isotope data.
A tool to convert IUPAC representations of glycans into SMILES strings.
IUPAC-based large-scale molecular pre-trained model for property prediction and molecular generation
Python script to quickly extract promoter and terminator regions with the NCBI API. Search for the presence of individual pattern or transcription factor responsive elements with manual sequence (IUPAC) or JASPAR API.
Encoder-decoders for translating different chemical formats.
MSA2dist calculates pairwise distances between all sequences of a DNAStringSet or a AAStringSet using a custom score matrix and conducts codon based analysis
Translate nucleotides (DNA & RNA) to aminoacid using IUPAC ambiguity codes
Biostrings port in Java (for study)
pattern matching with error for small pattern size (<= 64) for DNA and IUPAC
Collapse a set of redundant kmers to use IUPAC degenerate bases
Algorithms for Bionformatics - Python Module to handle biological sequences and run common algorithms and techniques
🧪 Naming non-cyclical alkanes using the official IUPAC nomenclature
A simple HTML page with Javascript to determine all possible sequences represented by IUPAC nucleotide codes
Different prototypes for detecting chemical graph presentation of the molecules into computer-readable format from image, IUPAC name
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