Codes used for spatial analysis incorporating WORLDCLIM open source climate data variables

Explainable Species Distribution Modeling

📈 Markdown files and R code for BIOS331 (General Ecology) modeling assignments.

R code to reproduce analyses in "Rapid winter warming could disrupt coastal marine fish community structure" (Clark et al, Nature Climate Change, 2020)

Bayesian Priors for Matrix Population Models

R functions for data analytics which I created for SANBI. The function analyzes GPS waypoints and tracks and estimates a field survey's efficiency. Part of the function also creates visual data summaries.

School of ecology package for teaching ecological tasks, algorithms and model fitting.

Open access repository for (some) data-sets, reproducible analyses, conference slides and manuscript for a publication based on my BSc Hons project (in press in Journal of Biogeography).

Workflow for preparing ecoacoustic species annotations and raster layers to use in species distribution modelling, with R

Agent-based metabolic modelling of microbial communities in time and continuous µ-meter-scale space

Code for manuscript "Time-varying effects of local weather on behavior and probability of breeding deferral in two Arctic-nesting goose populations" (Oecologia; 10.1007/s00442-022-05300-x)

A package written for my PhD thesis research. The one can perform reconstruction of the climatic niche of a species using this. Documentation not finished yet.

Mathematical model(s) for the symbisis between Allivibrio fisheri and Euprymna scalopes

This is a quick script using BlackMarble R package. It is user friendly for our lab purposes.

The microbial Lag duration calculator code (package miLAG and shiny)

R package designed for exclusion-based parentage assignment

I am using physicochemical properties of mosquitoe larval habitat to predict their abundance and co-occurence, in southern Nigeria.