Simplify prototyping and testing LLM applications in healthcare context 💫 🏥

Electronic Health Record Analysis with Python.

A tool to query relational EHR databases

Graph representation learning with GNNs for predicting disease risk from family EHRs

🧪Yet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom datasets, cohorts, prediction tasks, endpoints, preprocessing, and models. Paper: https://arxiv.org/abs/2306.05109

Continual Learning of Electronic Health Records (EHR).

Machine Learning for COVID-19 Data Analysis Project

Official repo for "Characterizing Stigmatizing Language in Medical Records" (ACL 2023)

[preprint'24] EHRAgent: Code Empowers Large Language Models for Complex Tabular Reasoning on Electronic Health Records

[ML4H 2022] This is the code for our paper `Counterfactual and Factual Reasoning over Hypergraphs for Interpretable Clinical Predictions on EHR'.

Open Odonto Application

COVID-19 EHR data analysis pipeline

Python functions to facilitate the pre-processing of data for ML tasks in a clinical context

Repository for the Paper: „On the Importance of Step-wise Embeddings for Heterogeneous Clinical Time-Series“

Backend for a distributed electronic health records system

DjangoEHR is an Electronic Health Records (EHR) system developed using the Django web framework. This project aims to provide healthcare professionals with a robust and secure platform for managing patient records, appointments, and medical information.

Estimate sentiment in clinical notes via keywords or deep learning models

Classification of EHR data with BERT

FHIR Python Analysis Client and Kit (FHIRPACK) is a general purpose FHIR client that simplifies the access, analysis and representation of FHIR and EHR data using PANDAS, an ETL philosophy and a functional syntax. It was initially developed at the IKIM and HDDBS in Germany. Read more at https://zenodo.org/record/8006589

A Comprehensive Benchmark For COVID-19 Predictive Modeling Using Electronic Health Records