Gene Set Enrichment Analysis in Python
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Updated
May 8, 2024 - Python
Gene Set Enrichment Analysis in Python
Python implementation of Spatial Analysis of Functional Enrichment (SAFE)
Python package to perform enrichment analysis from omics data.
A Python package for gene network analysis
Overrepresentation analysis for KEGG and PID pathways using community detection
Library for KEGG pathway enrichment analysis
Generic enrichment analysis
HARE: Genetic Feature Enrichment Analysis Pipeline
In Press, GigaScience. Web app for post-GWAS/QTL analysis that performs a slew of novel bioinformatics analyses to cross-reference GWAS/QTL mapping results with a host of publicly available rice databases
This code was written and used to perform the comparative interactome analysis of β-arrestin1 and 2.
Bayesian tests for set enrichment 🍞
LORA: Lipid Over-Representation Analysis
A Web-Based Gene-Enrichment and Functional Annotation Tool
A python package to explore pathways, diseases and drugs associated to a list of targets (genes, proteins, etc)
A Snakemake workflow for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, and GSEApy.
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