LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.

Older repo for MRLocus. See new website for software usage guide:

Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression

Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation

A workflow based on QTLtools to run cis- and trans-QTL analyses.

NPDR: Nearest-neighbor Projected-Distance Regression with the generalized linear model

Experimental design framework for scRNAseq population studies (eQTL and DE)

Script and pipeline for BRAINcode project

Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform GWAS/TWAS on complex trait.

Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)

client to the cimr-d database for continuous integration and analysis using cimr

CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq

Analysis of regulatory impacts of GWAS SNPs associated with psychiatric disorders and cognitive functioning.

Software to perform multi-ancestry SNP fine-mapping on molecular data

An Online Database of 3D Chromatin Structure

De novo discovery of traits co-occurring with chronic obstructive pulmonary disease.

GTEx eQTL analysis

fastQTL analysis of methylation and expression data

Computationally efficient and statistically powerful software for detecting context-specific eQTL effects in multi-context genomic studies.