Scripts in bash and python to manipulate dicom images
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Updated
Oct 13, 2023 - Python
Scripts in bash and python to manipulate dicom images
fMRI data processing pipelines
Repository for initial code behind OpenNFT's motion monitoring add-on (afterwards renamed to real-time quality assessment module (rtQA)).
The HCP Pipelines product is a set of tools (primarily, but not exclusively, python3) for processing MRI image using Nipy. This repository is based on the original HPC preprocessing pipeline
predictive machine learning classification and data processing on neuroscience brain image data
fMRI-Preprocessing pipeline used for [Guillon et al., 2019]
Python library for setting up FEAT analyses (FSL)
An attempt at an fMRIPost workflow for handling phase data
Comparing latent space representations using autoencoders and vision transformers using fMRI data.
Python implementation of RETROICOR - physiology regressors for fMRI preprocessing.
Collection of Plugins for PyNIPT project
A collection of python scripts and functions to (po)st(p)rocess fmridata, preprocessed with fmriprep
This repository is associated with the manuscript: “Graph Ricci Curvatures Reveal Atypical Functional Connectivity in Autism Spectrum Disorder”
This code repository contains a collection of Python scripts for classifying autistic and control conditions using Support Vector Machines (SVM), leveraging preprocessed functional MRI (fMRI) data from the ABIDE dataset.
Scripts for comparing different fmriprep denoising approaches on quality control functional connectivity (QC-FC) motion, QC-FC distance-dependence, and temporal degree of freedom loss.
An analysis tool that uses per-voxel statistical maps in conjunction with FSL atlases to create per-region statistical maps. Current usage includes the creation of regional maps of temporal signal to noise ratio.
bids application for processing functional MRI data, robust to scanner, acquisition and age variability.
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