genotype
Here are 30 public repositories matching this topic...
GenoTools: Advanced Genotype Data Analysis A robust suite for processing genotype data, offering genotype calling (.idat to PLINK), comprehensive sample/variant QC, and ancestry estimation. Ideal for computational biology and genetics research.
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Oct 9, 2024 - Python
Pipeline for processing FASTQ data from an Illumina MiSeq to genotype human RNA viruses like HIV and hepatitis C
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Oct 14, 2024 - Python
Modeling and Analysis of (Statistical) Genetics data in python
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Oct 1, 2024 - Python
Package to run a genotype quality control pipeline
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Sep 24, 2024 - Python
A Python package for pharmacogenomics (PGx) research
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Aug 3, 2024 - Python
tools for genetic genealogy and the analysis of consumer DNA test results
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Jul 13, 2024 - Python
A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data
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Mar 11, 2024 - Python
mgatk: mitochondrial genome analysis toolkit
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Mar 4, 2024 - Python
Phasing and genotype Imputation comparison. Have been evaluated: BEAGLE 5.4, EAGLE 2.4.1, SHAPEIT 4, MINIMAC 4, IMPUTE 5, using accuracy metrics like: IQS(Imputation Quality score), r2 (Pearson correlation), Concordance.
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Feb 29, 2024 - Python
A simple python library to identify the most likely strain from the population
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Jan 11, 2024 - Python
Collecting Genotypes from ENA and make their SNPs
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Sep 27, 2021 - Python
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