A Reliable and Fast Algorithm for Single Individual Haplotyping
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Updated
May 7, 2017 - Java
A Reliable and Fast Algorithm for Single Individual Haplotyping
Haplo- and Diplotype Star Allele matcher for Drug Dosage Guidelines
Split a BAM file by haplotype support
This program leverages zero recombination clusters and their relative positions on a linkage group to impute phases for missing data with high fidelity.
Calculate SMD and Hamming and Jaccard distances between each pair of samples in a set of variant files.
Viral quasispecies assembly via maximal clique finding. A method to reconstruct viral haplotypes and detect large insertions and deletions from NGS data.
A pipeline for phasing haploptypes using short readbackphased haplotype blocks in population of samples.
Haplotype RecOnstruction using Longitudinal sequencing Data
A Novel Computational Method Based on Genetic Algorithms for Haplotype Assembly
Collection of several small tools. These tools stay here temporarily and may move to other major repositories as they evolve.
SNP pipeline using Snakemake for the Weisrock Lab's Tiger Salamander project.
Tools for data conversion and results visualization for fineRADstructure (http://cichlid.gurdon.cam.ac.uk/fineRADstructure.html)
A python parser to simplify and build the VCF (Variant Call Format).
Intersect multiple VCF files with haplotype awareness
An algorithm for recovering haplotypes from metagenomes
Fast and simple haplotype counting.
Long sequencing reads classifier
Minor Variant Calling and Phasing Tools
The bash script reformats SHAPEIT .haps file to show samples by rows instead of variants by rows
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