hi-c
Here are 77 public repositories matching this topic...
A cool place to store your Hi-C
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Jun 3, 2024 - Python
Accurate and flexible loops calling tool for 3D genomic data.
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May 19, 2022 - Python
TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models f…
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Jun 4, 2024 - Python
flexible suite of CLI tools for contact extraction (.pairs) from sequencing data (Hi-C, Micro-C and other chromosome capture methods)
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May 3, 2024 - Python
A versatile tool to perform pile-up analysis on Hi-C data in .cool format.
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Feb 5, 2024 - Python
Lightweight converter between hic and cool contact matrices.
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May 30, 2024 - Python
Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps
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Dec 16, 2022 - Python
Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation
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May 4, 2024 - Python
C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.
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Mar 19, 2024 - Python
A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes
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Oct 21, 2023 - Python
An easy-to-use Hi-C data processing software supporting distributed computation.
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Feb 9, 2024 - Python
Chromosome polymer simulations and in silico capture experiments
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Dec 5, 2023 - Python
A Python implementation for BH-FDR and HiCCUPS
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Aug 14, 2023 - Python
A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains
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Aug 4, 2022 - Python
Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.
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Mar 20, 2024 - Python
Simple library/pipeline to generate and handle Hi-C data.
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May 30, 2024 - Python
Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.
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May 15, 2023 - Python
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