Hi-C Sequence Mapping using FANC

Source code and comments for the diffHic user's guide.

This repository includes code and a pre-trained model of scHiGex for single-cell gene expression prediction.

[OUTDATED: Use HiGlass Server instead] The HiPiler Server

SLUR(M)-py (pronounced slurpy): A SLURM Powered Pythonic Pipeline for Parallel Processing of 3D (Epi)genomic Profiles

Code supporting Beitel et al. (2014) regarding strain- and plasmid-level metagenome deconvolution using high-throughput chromosome conformation capture.

Assembler for HiC data

Hi-C data Analysis and Processing PIpeline

An awesome Hi-C + ChIP (HiChIP) sequencing pipeline.

Practical and home works in the discipline Bioinformatics.

Configurable Hi-C pipeline that is easy to use

JIT-accelerated HiC analysis tool

A collection of fancy HiGlass view configs

SCI and LINE to form Hi-C graph embeddings. Comparison with Hi-C-LSTM. Modification of original repository.

Projet MEET-U master 2 BIM : 2022 - 2023 Projet de bio-informatique sur les compartiments codé en Python

Small Python package to perform spectral analysis on Hi-C matrices and visualize the results.

Method for rescuing collapsed contigs.