Super LeArner Predictions using NAb Panels

SEEPS: Sequence Evolution and Epidemiological Process Simulator

Package for incidence estimation via recency assays with single time-point cross-sectional data collection

Australian diagnosis and care cascade calculations

HIV Mortality Rate in Sub-Saharan African (SSA) Countries

The diversity of RNA structural elements and their documented role in human diseases make RNA an attractive therapeutic target. However, progress in drug discovery and development has been hindered by challenges in the determination of high-resolution RNA structures and a limited understanding of the parameters that drive RNA recognition by smal…

A repository for the Advanced Programming Tutorial that teaches you how to develop an interactive model using Shiny

Network Models of HIV Transmission Dynamics among MSM and Heterosexuals

Incidence Estimation Tools

Current development version of EvoNetHIV package

Understanding suppression of HIV in R

R code for evaluating adult HIV incidence, health, & implementation outcomes for the first phase of the SEARCH Study (https://www.searchendaids.com/). Full statistical analysis plan available at https://arxiv.org/abs/1808.03231

Reconstruction and analysis of the HIV outbreak in Scott County, Indiana

Impact of providing ART to PLHIV who are ineligible for Medicare in Australia

Estimating the contribution of each step of the HIV cascade to new infections

Shiny app for interactive HIV care cascade model https://jackolney.shinyapps.io/CascadeDashboard