Bash scripts for analysis of Hyb-Seq data (from raw reads to species trees)
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Updated
Oct 24, 2024 - Shell
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hybseq-data
Here are 5 public repositories matching this topic...
Sondovač is a script to create orthologous low-copy nuclear probes from transcriptome and genome skim data for target enrichment. For latest version check "releases".
science
data-science
bioinformatics
pipeline
genetics
ngs
bioinformatics-pipeline
phylogenetics
data-analysis
orthologues
phylogenomic
transcriptome
phylogenomics
molecular-biology
bioinformatics-analysis
ngs-analysis
taxonomic-classification
phylogenomics-pipeline
ngs-pipeline
hybseq-data
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Updated
Feb 16, 2024 - TeX
Set of scripts to process HybSeq target enrichment HTS data (on computing grids).
data-science
bioinformatics
genomics
ngs
alignments
bioinformatics-pipeline
data-analysis
phylogenomics
molecular-biology
bioinformatics-analysis
bioinformatics-scripts
ngs-pipeline
hybseq-data
species-tree
metacentrum
paralogs
ngs-scripts
hybpiper
gene-tree
hybseq-scripts
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Updated
Sep 17, 2024 - Shell
desining block alignment geneotyper tags based on the whole genome alignment or gene alignment for phylogenomics
bioinformatics
edna
genome-analysis
golang-application
environmental-dna
genotyping-by-sequencing
hybseq-data
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Updated
Sep 29, 2024 - Go
Materials for course about processing HybSeq data on computing grids
learning
bioinformatics
terminal
course
scripting
phylogenetic-trees
data-analysis
command-line-tool
data-analyses
bash-script
bioinformatics-data
computing
phylogenomics
shell-scripting
bioinformatics-analysis
species-trees
grid-computing
bioinformatics-scripts
hybseq-data
metacentrum
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Updated
Jun 17, 2024 - TeX
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