Mathematical Modeling of Infectious Disease Dynamics
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Updated
May 2, 2024 - R
Mathematical Modeling of Infectious Disease Dynamics
Unified COVID-19 Dataset
R Package for individual based epidemiological models
Repo for the course Statistical Methods in Infectious Disease Epidemiology at UZH
Create Contact Matrices from Population Data
A visit-based contact tracing application built to consume healthcare encounter data.
Incidence Estimation Tools
Slides and Practicals for the BIDD modelling short course
Supplementary R package for the book chapter "Forecasting Based on Surveillance Data"
PhyloTrace is a GUI platform for a fully controllable cgMLST analysis workflow.
A dedicated pipeline designed for the inference of COVID19 transmission networks in a population complete with the prediction of unsampled sources of infection using SARS-CoV-2 genomic sequences. Our pipeline is built upon the BEAST2 and TransPhylo software.
Project for Data Challenge 2491 Module
The pebble game: A simple game that can be used to understand epidemics and vaccination
Estimating the contribution of each step of the HIV cascade to new infections
🌍 R package for the paper on mapping FOI and predicting control impact
An infectious disease surveillance study on estimating the county-level magnitude of infectiousness (eg. time-varied reproductive number) in Georgia from March to July in 2020 by using designed tranmission-based algorithm and maximum likelihood methods to understand spatiotemporal variation of COVID-19 transmission in Georgia.
Bacterial Genomics Workflow for Infectious Disease Diagnostics and Surveillance
Bacterial STI Screening Rates by Symptomatic Status among Men Who Have Sex with Men in the United States: A Hierarchical Bayesian Analysis
A shiny app to visualise the trade-offs between school age and neonatal BCG vaccination
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