Statistical Machine Intelligence & Learning Engine
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Updated
Jun 15, 2024 - Java
Statistical Machine Intelligence & Learning Engine
Manifold learning for single-cell single-nucleotide genetic variations
Supervised visualization of high-dimensional data using random forests
Single cell trajectory detection
[IEEE CISS 2024, ICMLW 2023] Assessing Neural Network Representations During Training Using Noise-Resilient Diffusion Spectral Entropy
Companion repository for the paper "Representation Learning via Manifold Flattening and Reconstruction"
Manifold Learning via Diffusion Maps in Julia
TorchDR - PyTorch Dimensionality Reduction
A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gene regulatory network (tpGRN) for single-cell transcriptomic data
🔴 MiniSom is a minimalistic implementation of the Self Organizing Maps
This is the code implementation for the GMML algorithm.
CellRank: dynamics from multi-view single-cell data
Implementation of Low Distortion Local Eigenmaps and several variations of it
A Julia package for manifold learning and nonlinear dimensionality reduction
PHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional data.
Filling the 3D 'scattering volume' by appropriately-oriented 2D scattering patterns. An analytical model suggests a numerical procedure (using Diffusion Map and the fisrt 9 non-trivial eigenvectors). The Matlab code here 1) synthesizes 2D scattering patterns; 2) Forms the Distance Matrix of mimages; and 3) retrieves the (relative) orientations u…
A Python implementation of Manifold Sculpting
Extended Dynamic Mode Decomposition for system identification from time series data (with dictionary learning, control and streaming options). Diffusion Maps to extract geometric description from data.
A model-based, unsupervised manifold learning method that factors complex cellular trajectories into interpretable bifurcating Gaussian processes of transcription.
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