Using the Usher Matrix approach to analyze a sample population of the desert tortoise.

Solving a single species reaction-diffusion equation and the scaled Lotka-Volterra via travelling waves.

Physically Based Modelling of Cirdadian Glucose Dynamics

Code to simulate local calcium dynamics in ER-PM junctions during store operated calcium entry. This MATLAB code was used to make the figures presented at FASEB Calcium and Cell Function, Lake Tahoe 2018

Analysis script for "Neutral competition boosts chaos in food webs"

code to infer model parameters from data (first dedicated to the dynamic clicks task)

COMAP 2020 Submission

The codes of Drylab Team, iGEM ITB 2017 to support the wetlab.

The files in this repository reproduce all the simulations and graphs in the paper, Fofana & Hurford 2022, Parasite-induced shifts in host movement may explain the transient coexistence of high- and low-pathogenic disease strains, J Evol Biol.

EPIDEMIC is an easy-to-run Matlab/Octave educational toolkit for epidemiological analysis.

epidWaves is a Matlab/Python package to fit multi-wave statistical models to the complex epidemic data.

ParameterEstimation.jl is a Julia package for estimating parameters and initial conditions of ODE models given measurement data.