MDAnalysis is a Python library to analyze molecular dynamics simulations.
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Updated
Jul 29, 2024 - Python
MDAnalysis is a Python library to analyze molecular dynamics simulations.
Interaction Fingerprints for protein-ligand complexes and more
a python package for the interfacial analysis of molecular simulations
Parallel algorithms for MDAnalysis
Fast and accurate aerodynamic modeling using general numerical lifting-line theory.
pKa estimates for proteins using an ensemble approach
Command line interface for MDAnalysis
a logistics and persistence engine for the analysis of molecular dynamics trajectories
MDAnalysis tool to calculate membrane curvature.
SAPT energy calculator built using MDAnalysis and Psi4
Solvent network analysis. Hop is a python package based on MDAnalysis to analyze solvation dynamics.
Access to data for workshops and extended tests of MDAnalysis.
Analysis of molecular dynamics trajectories or conformational ensembles in terms of spin-label distances as probed in double electron-electron resonance (DEER) experiments.
Benchmarking MDAnalysis with Dask (and MPI). Supplementary Information for SciPy 2017 paper.
A package for molecular dynamics analysis and parallel tempering in GROMACS
Tactic MMIC translator for MDAnalysis/MMSchema
An MDAKit implementing a Python interface for the HOLE program.
Tutorial for SPIDAL presentation at workshop, showing how to use Midas radical.pilot to analyze an ensemble of MD trajectories with Path Similarity Analysis (as implemented in MDAnalysis).
Compilation of different scripts used for my MD analysis
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