A collection of Galaxy-related training material

Repository containing lists of all published ancient metagenomic (and related) samples and libraries

Detecting contamination in NGS data and multi-species analysis

An interactive radial tree for functional hierarchies and omics data visualization

This repository contains all CWL descriptions of the MGnify pipeline version 5.0.

Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bioinformatics/btac389

💯 Snakemake-based amplicon processing protocol for 16S and ITS sequences.

Open-source opinionated Galaxy-based framework for microbiota analysis

Integrated Machine Learning for Multi-omics Classification and Prediction

🍰 Per sequence functional classification and taxonomic assignments

Searching large collections of sequencing data with genome-scale queries

Ancient DNA Read Simulator for Metagenomic

Pipeline to pull microbial reads from WGS data and perform metagenomic analysis

How to analyze shotgun metagenomic data with phyloseq - a walkthrough

MetaTrinity is a novel metagenomic analysis tool employing efficient containment search techniques and heuristics for read mapping to achieve significant speedup while maintaining high accuracy. This positions MetaTrinity as an efficient solution, optimally balancing speed and precision in metagenomic analysis.

A metagenome annotation workflow for UBC's Microbiology 405 course, Bioinformatics

Collection of walkthrough tutorials on how to use Tweedieverse for differential analysis of omics data.

Microbiome Study of Lupus Patients

MetaStorm: A public webservice for the analysis and annotation of short sequence reads metagenomes

The website showcases Arun Boddapati's professional portfolio, emphasizing his expertise as a bioinformatics scientist and machine learning expert.