Finding viable restriction enzymes from NEB given an amino acid sequence.
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Updated
Jul 22, 2022 - Python
Finding viable restriction enzymes from NEB given an amino acid sequence.
In silico Promotor Detektion von Oberflächen-assoziierten Faktoren und ausgewählten Resistenzgenen in Staphylococcus aureus
Code to measure the square area of colonies in an image file and export the data.
From second generation sequencing reads to annotated bacterial genome
Small model for language modeling based on distilgpt2 and on microbiology-related text data
gmx_wheel+ is a tool for analysing and visualizing the orientation of helical antimicobial peptides based on molecular dynamics simulations
A library to get information on organisms and UniProt identifiers. This includes growth temperature, growth ph, pfam domains, taxonomic lineage.
Code used to analyze genetic changes between donor and recipient strains in the gut microbiome dataset used in the Li et al. 2016 FMT study
Computational screening of green colour colonies from petri dish through python tool GD.A1.
Synthetic PHasE Rate Estimator by single metagenome sequence
recogniZing gEnome seqUences in metagenomic aSSemblies
Python Scripts for Haim Lab (Microbiology Research) Projects
multi-locus sequence type clade classifier for Clostridioides difficile
Curve Growth modeling-IPASS project
My Microbiology research in the Ujor Laboratory at UW-Madison.
Automatic RNA extraction protocol in OT-2 system (Opentrons)
Bacterial video tracking & analysis
A package for automated cell colony counting
This project is instrument for my work as microbiologist. It helps me to keep data and make graphics based on this information, which help me to optimize the biotechnology processes.
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