Qiita - A multi-omics databasing effort
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Updated
Jul 10, 2024 - Python
Qiita - A multi-omics databasing effort
topological data analysis of population-scale microbiomes
Analyses in R and Python Using curatedMetagenomicData
Tools for phylogenetic data analysis including visualization and cluster-computing support.
A Collection of Bioinformatics Projects
A reference-free statistical approach to diversity-generating & mobile genetic element discovery
Automated retrieval of consistent geographical metadata for microbiome research!
Code to reproduce preprocessing analysis of IBD dataset from the Human Microbiome Project. This work will provide a walk through analysis tool for the scientific community with less technical knowledge on data science and machine learning.
process raw reads from ubiome
A database for storing and analyzing omics data
MAPle provides three different modules for the analysis of paired-end short read metagenomic data
Microbiome Data Analysis
A python package to calculate the dysbiosis score in microbiome datasets
This repository provides the scripts used to analyze the metagenomics data from the paper Nicotinamide Riboside-Conditioned Microbiota Deflects High-Fat Diet-Induced Weight Gain in Mice.
Python utility to generate distance matrices, perform PCoAs and generate taxonomic summaries using simple tab-separated feature tables.
Next Generation Phylogenetic Microbiome Analysis Framework
A python implementation of the decontam R package for ASV filtering.
Predictive model, utilizes several machine learning algorithms to predict patient disease status from abundance data
Convert the American Gut Microbiome Project phenotype .xml files into a single .csv file.
Tools for phylogenetic data analysis including visualization and cluster-computing support.
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