Collection of tools to visualize microbiological abundance data for dissertation.
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Updated
Jul 4, 2024 - R
Collection of tools to visualize microbiological abundance data for dissertation.
Qiita - A multi-omics databasing effort
Supporting materials for the manuscript "Characterisation and comparison of semen microbiota and sperm function in men with infertility, recurrent miscarriage, or proven fertility
A python package to calculate the dysbiosis score in microbiome datasets
R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.
Microbiome Analysis Plotting and Visualization
The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
Study of the faecal microbiome of patients with metabolic syndrome and type 2 diabetes
Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
short-read amplicon data visualization suite
This repo details the multi-stressor exposure experiment conducted in August 2022 at Hawaii Institute of Marine Biology (HIMB) in Kaneohe Bay. In this experiment coral fragments were exposed to increasing levels of phthalate pollution and thermal stress for 48 hours.
Workflow and R scripts for Giongo et al. (2024)
Functions to manipulate and visualize microbial community data
An ensemble of functions for easier and quicker preliminary microbiome analyses
MicrobioSee2, a desktop sofware for visulization of microbiome result, which contian multiple modules, such as Alpha Diversity, Beta Diversity, Species Conpositions, volcano plot, and pie chart.
MicrobiomeStat Tutorial Repository: This is a comprehensive resource for learning how to use the MicrobiomeStat package. It provides a step-by-step guide to effectively analyze complex microbiome data.
R package for estimating sparse and positive definite basis covariance matrices from compositional data
🦠 A comprehensive R package for deep mining microbiome
Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing
Microbial community dynamics during key life-history transitions in the chemosymbiotic mussel, Gigantidas childressi
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