Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)

NOVOPlasty - The organelle assembler and heteroplasmy caller

mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data

A python and C++ library for reading and writing neuronal morphologies

a tool for predicting mitochondrial DNA deletions using soft-clipping

Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari

Mitochondrial Alteration Enrichment and Genome Analysis Toolkit

Consensus calling (or "reference assisted assembly"), chiefly of ancient mitochondria

Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020

Module and script to remove contamination in assembled genomes before submission to ncbi

mitochondrial variant analysis tools

visualization of the human mitochondrial genome

A small pipeline for assembling mitochondrial genomes and filtering reads prior to assembly.

Deepred-Mt is a novel method based on deep neural networks to predict C-to-U editing sites in angiosperm mitochondrial RNA.

EM segmentation of mitochondria from SNEMI3D data

El genoma pequeño - analysis workflow for "the little genome." This repository holds a computational workflow to analyze the mitochondrial genome.

MToolBox pipeline written in snakemake to allow a better scalability

Infer the dynamics of mitochondrial heteroplasmy during different life stages using population genetics and phylogenetics

LOCALIZER: subcellular localization prediction of plant and effector proteins in the plant cell

R package to plot Human Mitochondrial Variants from Dataframes, VCF or JSON files