Simple molecular dynamics integrator written from scratch in C++.
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Updated
Sep 12, 2016 - C++
Molecular dynamics allows the atoms and molecules to interact for a fixed period of time, giving a view of the dynamic "evolution" of the system.
Simple molecular dynamics integrator written from scratch in C++.
A local stress calculation library for molecular dynamics simulations written in C++11
PyBias: PLUMED plug-in with embeded Python
Analysis of molecular dynamics trajectories - orientational structure and dynamics of water around solutes
Data Analysis of MD Simulation
A validation of A Rehman paper of molecular dynamics.
This Repo will contain Assignments and Project for course Molecular dynamics and simulations.
Exercise for a small C/C++ module at ESPCI Paris.
DL_POLY with MB-pol and energy/stress decomposition
ANN force plugin for OpenMM with native CUDA support
This repository contains some standard textbook codes I wrote for my graduate courses in computational physics of fluids and applied mathematics. They illustrate some fundamentals of computational methods and some useful C++ techniques.
Hoomd plugin to apply a harmonic pinning potential on both translational and rotational motions.
Some C++ code for basic Molecular Dynamics simulations.
Explores various parallelization algorithms for speeding up molecular dynamics simulations
A simple cluster analysis script for atomic systems