Schloss Lab Tools for Reproducible Microbiome Research 💩

Mothur procedures for 16S and ITS analysis

Easy-to-use tool facilitating work with Mothur.

The manuscript accompanying the OptiFit algorithm in mothur

Python wrapper for the bioinformatics tool mothur

Vectorization and Unsupervised Learning of Mouse Operation Taxonomic Units to determine which species of bacteria form distinct groups in a dataset.

Microbial Community Analysis with Chipster

microbiome analysis of ant colonies

Snakemake template for microbial amplicon sequence analysis with mothur.

CUSO Microbiome analysis workshop 2020

Identifying gut microbiome features associated with the risk of acquiring an enteric drug-resistant organism (e.g. vancomycin-resistant Enterococcus and resistant gram-negative bacteria) in patients recently discharged from acute-care hospital and admitted into nursing homes.

Milk Metagenomics Analysis of Cow Milk Samples across Global sites Using Mothur

microbiome analysis of ant colonies

16s rRNA Sequencing Meta-analysis Reproducibility Tool (using mothur).

Repositorio de pipelines necesarios para analizar secuencias de amplicones illumina con mothur. Se incluyen análisis con asv de bacterias y de hongos (estos últimos poco explicados por Schloss en su SOP).