Structural variation caller using third generation sequencing
-
Updated
Jul 14, 2024 - Python
Structural variation caller using third generation sequencing
A PyTorch Basecaller for Oxford Nanopore Reads
pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy)
PEPPER-Margin-DeepVariant
Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
Methylation/modified base calling separated from basecalling.
Identification of differential RNA modifications from nanopore direct RNA sequencing
Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
SquiggleKit: A toolkit for manipulating nanopore signal data
Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)
Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads
Research release basecalling models and configurations
Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics
Snakemake pipelines for nanopore sequencing data archiving and processing
Recentrifuge: robust comparative analysis and contamination removal for metagenomics
A versatile sequenced read processor for nanopore direct RNA sequencing
RNA modifications detection from Nanopore dRNA-Seq data
A tool to identify, orient, trim and rescue full length cDNA reads
Add a description, image, and links to the nanopore topic page so that developers can more easily learn about it.
To associate your repository with the nanopore topic, visit your repo's landing page and select "manage topics."