Brain Modeling Toolkit
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Updated
May 22, 2024 - Python
Brain Modeling Toolkit
A Blender add-on to bring animations from NEURON
Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Install & use in 5 mins.
A virtual optogenetics laboratory
This is a repository with implementations of neuron models, synapses, and spiking neural networks (SNN). It's still in development and it has original content in terms of code.
PyNeval, a toolbox for quantative analysis on neuron reconstruction result.
Implementing Artificial Neural Network training process in Python
SanPy is software for whole-cell current clamp analysis.
Ring network model test to demonstrate the use of CoreNEURON
A repository for co-ordinating work on ontologies for the Brain Data Standards Project
Biologically detailed neural network simulations and analysis API
A Blender addon for visualizing your NEURON model, with customizable voltage traces.
Neuron geometry library for swc format.
The memristive schematic implementation for spinal cord segment
Offical Implementation of "CLIF: Complementary Leaky Integrate-and-Fire Neuron for Spiking Neural Networks" (ICML 2024)
Python tools to interact with Google brainmaps API
A collection of scripts to assist with developing networks in BMTK (https://github.com/AllenInstitute/bmtk)
Using machine learning to control electrodes
Generalisation of electrical models of neurons with MCMC
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