nextflow
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Epitypification pipeline for clinical NGS data. Written in NextFlow, Python & Bash.
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Apr 8, 2022 - Python
A pipeline to generate and benchmark synthetic datasets as described in Sergi et al., 2024.
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Jan 21, 2024 - Python
Paired Sequence Assembler using Flowcraft/Nextflow/Deploit
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Oct 25, 2019 - Python
A Nextflow workflow for generating the mutation profiles of SARS-CoV-2 genomes from Variants of Concern and Variants of Interest. COVID-MVP (https://github.com/cidgoh/COVID-MVP) can be used to visualize the mutations and functional annotations.
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Apr 19, 2024 - Python
Docker builds of bioinformatic tools for use with Nextflow
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Apr 29, 2022 - Python
Tools to reproduce the steps to run nf-core pipelines for bioinformatics analysis within Linux environments.
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Apr 26, 2022 - Python
Workflow management with Nextflow and nf-core
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Nov 2, 2022 - Python
The SCRaMbLE Polymer Interaction model (SPI) workflow
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Jul 21, 2022 - Python
A nextflow pipeline for analysis and visualisation of NGS data using FastQC and Python Ploty Dash.
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May 3, 2023 - Python
Nexflow workflow job executor (for OpenEBench VRE installation)
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Mar 13, 2024 - Python
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