Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.
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Updated
Jan 2, 2024 - Python
Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.
Python API and CLI tools for working with WEBKNOSSOS datasets, annotations and server interactions. Includes converter to OME-Zarr.
A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.
A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, in a parallelised manner.
Main tasks for the Fractal analytics platform
Ome(ro) SLide Image Conversion and Compression pipline (OmeSliCC)
A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)
Run encapsulated docker containers with BioFormats2Raw in the Amazon Web Services infrastructure.
Fractal tasks for the Opera/Operetta microscope and drug profiling
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