HarvardX: PH125.9x: Data Science - Capstone Breast Cancer Diagnosis Project

R Interface for Memorial Sloan Kettering's OncoTree API (oncotree.mskcc.org)

R Package that extracts chemotherapy regimens from drug exposures in the OMOP CDM

Used to obtain the results in "A stochastically curtailed two-arm randomised phase II trial design for binary outcomes" (DOI: 10.1002/pst.2067) by Law et al. Superseded by package "curtailment".

Clonal reconstruction from HTS data

A project focused on using single-cell RNA sequencing data (scRNA-seq) and pseudo time to improve colon cancer diagnosis and outcomes.

Personalized Network-based Anti-Cancer Therapy Appointment

The decider R package: decision making in multiple-arm oncology dose escalation trials with logistic regression

A classifier prototype that predicts cancer cell line sex and genotype from gene-based sequencing read counts.

Modernized HLALOH, a HLA loss of heterozygosity detection algorithm

Read different files of TSO500 data analysis output and integrate the data.

A systematic approach in using GEO2R for investigating gene expression differences between a low-metastatic group and the highly metastatic MDA-MB-231 (TNBC) human breast cancer cell lines.

Modifications to the "Exeter Oncology Model: Renal Cell Carcinoma edition (EOM-RCC)" as part of STARS work package 3.

Crossmapped phenotype ontologies for the oncology domain